View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16397_low_4 (Length: 410)
Name: NF16397_low_4
Description: NF16397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16397_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 14598577 - 14598201
Alignment:
| Q |
18 |
aaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatggagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598577 |
aaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatggagg |
14598478 |
T |
|
| Q |
118 |
agctctcttgagttttgaagcgatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598477 |
agctctcttgagttttgaagcgatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgat |
14598378 |
T |
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| Q |
218 |
tcttactttgcgttaaaaatggatccaaccaagaacaagagtaaactggatttcgtgaaggacagaagaagggtgaaaagggagtacgatgagttcaaag |
317 |
Q |
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| T |
14598377 |
tcttactttgcgttaaaaatcgatccaaccaagaacaagagtaaactggatttcgtgaaggacagaagaagggtgaaaagggagtacgatgagttcaaag |
14598278 |
T |
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| Q |
318 |
tgcgcataaatggccttcctgattctattaggagaagatctgatgcatttaatgcaagagaggaaatgaagatgatg |
394 |
Q |
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| T |
14598277 |
tgcgcataaatggccttcctgattctattaggagaagatctgatgcatttaatgcaagagaggaaatgaagatgatg |
14598201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 23 - 394
Target Start/End: Original strand, 14609904 - 14610275
Alignment:
| Q |
23 |
gagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatggaggagctc |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
14609904 |
gagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgcttgttatgtttcagatgatggaggtgctc |
14610003 |
T |
|
| Q |
123 |
tcttgagttttgaagcgatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattctta |
222 |
Q |
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| || | || || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14610004 |
ttttaacattcgaggccatggctgaggctgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattctta |
14610103 |
T |
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| Q |
223 |
ctttgcgttaaaaatggatccaaccaagaacaagagtaaactggatttcgtgaaggacagaagaagggtgaaaagggagtacgatgagttcaaagtgcgc |
322 |
Q |
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|||||| | ||| | |||||||| ||||||||||| | | | ||||| |||||||| |||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
14610104 |
ctttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggtgcgt |
14610203 |
T |
|
| Q |
323 |
ataaatggccttcctgattctattaggagaagatctgatgcatttaatgcaagagaggaaatgaagatgatg |
394 |
Q |
| |
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|||||||||||||| || || |||||||||||||||||||||||||| ||||| ||||||||||||| |||| |
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| T |
14610204 |
ataaatggccttccggagtcaattaggagaagatctgatgcatttaacgcaagggaggaaatgaagaagatg |
14610275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 12194885 - 12194677
Alignment:
| Q |
18 |
aaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatggagg |
117 |
Q |
| |
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|||| ||||| || ||||| || || |||||||||||||| || ||||||||||||||||||| || |||||||| |||||||| || || || || || |
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| T |
12194885 |
aaaaagagccaccccttgttaccgcaaataccattctttcaattctagcagttgattaccctgttgataaactcgcatgttatgtctctgacgacggcgg |
12194786 |
T |
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| Q |
118 |
agctctcttgagttttgaagcgatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgat |
217 |
Q |
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| || | | |||||| || ||||| ||||| ||||||||||| || || |||||||| |||||||| || ||| | ||||| |||||||| || || |
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| T |
12194785 |
ttcacttctaacttttgaggccatggccgaggcagcaagttttgcggagttgtgggttcctttttgtcggaagcacgacattgaaccaaggaacccggaa |
12194686 |
T |
|
| Q |
218 |
tcttacttt |
226 |
Q |
| |
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||||||||| |
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| T |
12194685 |
tcttacttt |
12194677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 44632937 - 44633135
Alignment:
| Q |
18 |
aaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatggagg |
117 |
Q |
| |
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|||| ||||| |||||||||||||| || |||||| | || || | ||||||||||| |||||||| ||| | ||||||||| | || |||||||| || |
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| T |
44632937 |
aaaaagagccacctcttgtaactgcaaacaccattttatctatccttgcagttgattatcctgtggaaaaagttgcttgttatttgtctgatgatggtgg |
44633036 |
T |
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| Q |
118 |
agctctcttgagttttgaagcgatggctgaggccgcaagttttgc-tgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctga |
216 |
Q |
| |
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|||||| |||| |||||||| | |||||| | || |||||||| ||||| |||||||| || ||| | |||||| | ||||||||||| |||||||| |
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| T |
44633037 |
agctcttttgacatttgaagctcttgctgagactgctagttttgcaagattt-tgggttcctttctgtagaaaacaccaaattgagccaagaaatcctga |
44633135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 41491889 - 41491819
Alignment:
| Q |
146 |
gaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctga |
216 |
Q |
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||||| ||||||||||||||||| |||||||| |||||||| || ||||| ||||| | |||||| ||||| |
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| T |
41491889 |
gaggcagcaagttttgctgatttgtgggttccattttgtcggaagcacaacattgacctaaggaaccctga |
41491819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 15419432 - 15419374
Alignment:
| Q |
167 |
ttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactt |
225 |
Q |
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|||||||| || |||||||| ||||||||||| || ||||||||||| ||| ||||||| |
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| T |
15419432 |
ttatgggtaccattttgtcgaaaacacaatatcgaaccaaggaatccagatgcttactt |
15419374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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