View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16397_low_5 (Length: 396)
Name: NF16397_low_5
Description: NF16397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16397_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 178 - 382
Target Start/End: Original strand, 5129235 - 5129439
Alignment:
| Q |
178 |
ttactataattgcaaccaacnnnnnnnactgacaaatgataagacagtaattcataaatgtagtgttcgtgttttcaagcatgctttccttaaattcttt |
277 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5129235 |
ttactataattgcaaccaactttttttactgacaaatgataagacagtaattcataaatgtagtgtttgtgttttcaagcatgctttccttaaattcttt |
5129334 |
T |
|
| Q |
278 |
attttgtatgttgttacacgatgcttataatatcatctgacatctcaagcaacatcatgcaaaaaattgaaattgtttaaatctaatcaatcaatttgat |
377 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5129335 |
attttgtatgttgtgacacgatgcttataatatcatcttacatctcaagcaacatcatgcaaaaaattgaaattgtttaaatctaatcaatcaatttgat |
5129434 |
T |
|
| Q |
378 |
caaag |
382 |
Q |
| |
|
||||| |
|
|
| T |
5129435 |
caaag |
5129439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 5128348 - 5128535
Alignment:
| Q |
1 |
cgctacacacattattttactatactttgtccgactttaccacctaaccgaacttcaaattaccccgttggaaaccagaagtttaagacaaaaacaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5128348 |
cgctacacacattattttactatactttgtccgactttaccacctaaccgaacttcaaattaccccgttggaaaccagaagtttaagacaaaaacaaaat |
5128447 |
T |
|
| Q |
101 |
ttgaattccacaatctactttcaactactctaattaattgagt--nnnnnnnnccactactataacttatacatgtattttactataa |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5128448 |
ttgaattccacaatctactttcaactactctaattaattgagtaaaaaaaaaaccactactataacttatacatgtattttactataa |
5128535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University