View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16397_low_6 (Length: 367)
Name: NF16397_low_6
Description: NF16397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16397_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 55448629 - 55448293
Alignment:
| Q |
16 |
atgtgcaagtgctgattggccattatcaaccataaaagccaaaccaactaatgataatgagcagaacaaatatattgtcattttttcgccagaaacaagg |
115 |
Q |
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| T |
55448629 |
atgtgcaagtgctgattggccattatcaaccataaaagccaaaccaactaatgataatgagcagaacaaatatattgtaattttttcgccagaaacaagg |
55448530 |
T |
|
| Q |
116 |
aattattcatgggttgatatgcttcttgttaaatcaattcatgagtttcctcaacctatagcatatgaaacttatcatgaaggattgaaaatggtacaag |
215 |
Q |
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| T |
55448529 |
aactattcatgggttgatatgcttcttgttaaatcaattcatgagtttcctcaaccaatagcatatgaaacttatcatgaaggattgaaaatggtacaag |
55448430 |
T |
|
| Q |
216 |
acttgacaattgcacgacaatttataatgcaaaagctcgccgtcgaaatgctctacattattaatcagtttcatcttaatgtatgtttttggtggtgcta |
315 |
Q |
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| T |
55448429 |
acttgacaattgcacgacaatttataatgcaaaagctcgccgtcgaaatgctctacattattaatcagtttcatcttaatgtatgtttttggtggtgcta |
55448330 |
T |
|
| Q |
316 |
ttttcctcttctccatttcctatttttggtaatctct |
352 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
55448329 |
ttttcctcttctccatttcctattttcggtaatctct |
55448293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 33522355 - 33522040
Alignment:
| Q |
16 |
atgtgcaagtgctgattggccattatcaaccataaaagccaaaccaactaatgataatgagcagaacaaatatattgtcattttttcgccagaaacaagg |
115 |
Q |
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|||||||| ||||||||||||||||||| | ||||||||||||||| ||| | |||| || | ||||| | | ||||||||||| || ||||||||| |
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| T |
33522355 |
atgtgcaatggctgattggccattatcaattgtgaaagccaaaccaactcatgttgatgaacaaagcaaatgtttcgtcattttttctccggaaacaagg |
33522256 |
T |
|
| Q |
116 |
aattattcatgggttgatatgcttcttgttaaatcaattcatgagtttcctcaacctatagcatatgaaacttatcatgaaggattgaaaatggtacaag |
215 |
Q |
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| || ||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| |
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| T |
33522255 |
agtttttcatgggttgatatgcttcttgttcaatcaattgataagtttcctcaacctatagcatataaaacttatcaagaaggattgcaaatggtacaag |
33522156 |
T |
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| Q |
216 |
acttgacaattgcacgacaatttataatgcaaaagctcgccgtcgaaatgctctacattattaatcagtttcatcttaatgtatgtttttggtggtgcta |
315 |
Q |
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||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||| |
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| T |
33522155 |
acttggggattgcgcgacaatttataatgcaaaagctcgctgtcgaaatgctctacatggttgatcagcttcatcttaatgtatgcttttggtggtgcta |
33522056 |
T |
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| Q |
316 |
ttttcctcttctccat |
331 |
Q |
| |
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|||||||||||||||| |
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| T |
33522055 |
ttttcctcttctccat |
33522040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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