View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16397_low_7 (Length: 362)
Name: NF16397_low_7
Description: NF16397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16397_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 2 - 347
Target Start/End: Original strand, 41221039 - 41221384
Alignment:
| Q |
2 |
tatgtattttgtcgattatgctactaagtagagtgttgtgagtttgtctgtagtttcgttttttatcttcaattttagcaatgttaaatcattgttgttt |
101 |
Q |
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| T |
41221039 |
tatgtattttgtcgattatgctactaagtagagtgttgtgagtttctctgtagtttcgttttttttcttcaattttagcaatgttaaatcattgttgttt |
41221138 |
T |
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| Q |
102 |
tcgatttattctactgatttaaatgaatcaatgccttctttagtaaaaaatatggaatacaatttacatatactaaacaattgataaatgatacctgaaa |
201 |
Q |
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| T |
41221139 |
tcgatttattctactgatttaaatgaatcaatgccttctttagtaaaaaatatggaatacaatttacatatactaaacaattgataaatcatacctgaaa |
41221238 |
T |
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| Q |
202 |
tacaaaaaatggaaagtagaatattatgcaactataaactagctatgtagggcaccctccaacaaccaattaatttcatattgaccttagtaacatcttc |
301 |
Q |
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| T |
41221239 |
tacaaaaaatggaaagtagaatattatgcaactataaactagctatgtagggcaccctccaacaaccaattaatttcatattgaccttagtaacatcttc |
41221338 |
T |
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| Q |
302 |
tcagattccaggtgaggtgagtgagttattcatatactttatcttt |
347 |
Q |
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| T |
41221339 |
tcagattccaggtgaggtgagtgagttattcatatactttatcttt |
41221384 |
T |
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