View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16397_low_8 (Length: 300)
Name: NF16397_low_8
Description: NF16397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16397_low_8 |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 9538111 - 9538377
Alignment:
| Q |
19 |
ggccactcaccataccatcttgtgtaaccaaaggataatcagatgcactaagattaataaaccaatcccatttacaactcctaagaagaattgccatagc |
118 |
Q |
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| T |
9538111 |
ggccactcaccataccatcttgtgtaaccaaaggataatcagaagcactaagattaataaaccaatcccatttacaactcctaagaagaattgccatagc |
9538210 |
T |
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| Q |
119 |
atgaagagttgtagaaagcatagttggacctttatatgtaacaaaattactcttctttataatccaaacatttcctacttgaccaaaaacaggttcatta |
218 |
Q |
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| T |
9538211 |
atgaagagttgtagaaagcatagttggacctttatatgtaacaaaattactcttctttataatccaaacatttcccacttgaccaaaaacaggttcatta |
9538310 |
T |
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| Q |
219 |
gtcacataatcaatcacatctctatgatctttctttggagcaccatgatccatatgaatcaaataat |
285 |
Q |
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| T |
9538311 |
ctcacataatcaatcacatctctatgatctttctttggtgcaccatgatccatatgaatcaaataat |
9538377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 3034198 - 3034254
Alignment:
| Q |
32 |
accatcttgtgtaaccaaaggataatcagatgcactaagattaataaaccaatccca |
88 |
Q |
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| T |
3034198 |
accatcttgagtaacaagtggataatcagaagcactaagattgataaaccaatccca |
3034254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 33717841 - 33717586
Alignment:
| Q |
22 |
cactcaccataccatcttgtgtaaccaaaggataatcagatgcactaagattaataaaccaatcccatttacaactcctaagaagaattgccatagcatg |
121 |
Q |
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| T |
33717841 |
cactcaccataccatcttgtgtaaccaatggataatcagaagcactaagattaataaaccaatcccaatgacatgtcttaagaagcattgccatagcatg |
33717742 |
T |
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| Q |
122 |
aagagttgtagaaagcatagttggacctttatatgtaacaaaattactcttctttataatccaaacatttcctacttgaccaaaaacaggttcattagtc |
221 |
Q |
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| T |
33717741 |
aagagtagttgcaagcatagttggtcctctataagttaccaaattaggcttcccaacaatccaaacattcccaacttgactaaaaacaggatcattagcc |
33717642 |
T |
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| Q |
222 |
acataatcaatcacatctctatgatctttctttggagcaccatgatccatatgaat |
277 |
Q |
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| T |
33717641 |
acatattctgccacatctttatgttctgcatctggagcaccataatccatgtgaat |
33717586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 4798 - 4742
Alignment:
| Q |
32 |
accatcttgtgtaaccaaaggataatcagatgcactaagattaataaaccaatccca |
88 |
Q |
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| T |
4798 |
accatcttgtgtaagcaagggataatcagaagcactaagattaataaaccaatccca |
4742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 47025919 - 47025863
Alignment:
| Q |
32 |
accatcttgtgtaaccaaaggataatcagatgcactaagattaataaaccaatccca |
88 |
Q |
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| T |
47025919 |
accatcttgtgtaagcaagggataatcagaagcactaagattaataaaccaatccca |
47025863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 33231009 - 33230953
Alignment:
| Q |
32 |
accatcttgtgtaaccaaaggataatcagatgcactaagattaataaaccaatccca |
88 |
Q |
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| T |
33231009 |
accatcttgagtgacaagaggataatcagaagcactaagattaataaaccaatccca |
33230953 |
T |
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