View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16398_high_8 (Length: 283)

Name: NF16398_high_8
Description: NF16398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16398_high_8
NF16398_high_8
[»] scaffold0057 (1 HSPs)
scaffold0057 (30-265)||(40804-41039)
[»] chr2 (5 HSPs)
chr2 (22-236)||(32252300-32252514)
chr2 (19-229)||(35922479-35922679)
chr2 (136-229)||(16858604-16858698)
chr2 (128-201)||(23656678-23656751)
chr2 (32-127)||(44586731-44586826)
[»] chr6 (6 HSPs)
chr6 (19-237)||(9190731-9190945)
chr6 (19-229)||(7848192-7848392)
chr6 (136-233)||(10641512-10641612)
chr6 (128-200)||(21083655-21083727)
chr6 (19-109)||(14745399-14745488)
chr6 (128-200)||(21038032-21038104)
[»] chr5 (5 HSPs)
chr5 (67-226)||(24757320-24757469)
chr5 (67-226)||(24615160-24615309)
chr5 (67-226)||(24711558-24711707)
chr5 (67-226)||(24744554-24744703)
chr5 (52-227)||(13935430-13935597)
[»] chr4 (6 HSPs)
chr4 (18-182)||(6821203-6821357)
chr4 (146-232)||(9564155-9564241)
chr4 (137-205)||(11936278-11936346)
chr4 (146-227)||(15873166-15873247)
chr4 (52-164)||(11555762-11555866)
chr4 (146-192)||(12136853-12136899)
[»] chr7 (4 HSPs)
chr7 (136-233)||(22614921-22615021)
chr7 (136-233)||(11655311-11655411)
chr7 (138-233)||(13477664-13477763)
chr7 (52-88)||(11655236-11655272)
[»] scaffold1001 (1 HSPs)
scaffold1001 (136-233)||(1226-1326)
[»] chr3 (5 HSPs)
chr3 (128-201)||(16362890-16362963)
chr3 (128-201)||(21974983-21975056)
chr3 (128-201)||(21997414-21997487)
chr3 (146-197)||(22159558-22159609)
chr3 (128-200)||(13927154-13927226)
[»] scaffold0737 (1 HSPs)
scaffold0737 (146-201)||(3930-3985)
[»] chr1 (1 HSPs)
chr1 (128-182)||(15541198-15541252)
[»] scaffold0385 (1 HSPs)
scaffold0385 (128-201)||(13972-14045)


Alignment Details
Target: scaffold0057 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 265
Target Start/End: Original strand, 40804 - 41039
Alignment:
Q  30 tgctggacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  40804 tgctggacttttctcccacatcatgcaagacaccatgctctagactctatatgaacacaatgaaatatattcaacaagtattggacatatacacttaaac 40903  T
Q  130 acatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcataga 229  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40904 acatagtcacataacccacatattaatgcaagacttcctctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcataga 41003  T
Q  230 taaacattgtttcccctctattttattttattattc 265  Q
    ||||||||||||||||||||||||||||||||||||    
T  41004 taaacattgtttcccctctattttattttattattc 41039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 32252514 - 32252300
Alignment:
Q  22 aagtatggtgctggacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattggacatatac 121  Q
    ||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |  |||||||| ||||||||    
T  32252514 aagtatgttactagacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaaggaaataaattgattaagtattgaacatatac 32252415  T
Q  122 acttaaacacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatc 221  Q
    |||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| || || |||||| ||||||||| ||||| ||||| ||||||    
T  32252414 acttaagcacatagtcacataatccacatattaatgcaagactccccctaaaatgcacaactctgttgcaagcacacaaaacattacaactcttctcatc 32252315  T
Q  222 atcatagataaacat 236  Q
    |||||| ||||||||    
T  32252314 atcatatataaacat 32252300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 35922679 - 35922479
Alignment:
Q  19 cagaagtatggtgctggacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattggacata 118  Q
    |||||||||| | ||||||||||||||||||| |||||||||   ||||||||||||||||||| || ||| ||| || |||  |||||||||   ||||    
T  35922679 cagaagtatgttactggacttttctcccacat-atgcaagactt-atgctctagactctatatgaacgcaaggaattaaatttgacaagtattacgcata 35922582  T
Q  119 tacacttaaacacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctc 218  Q
    |||||        |||||||||||  |||| ||| ||||||||||| | ||||||||||||||| ||| ||||| ||||||||  || ||||||| | ||    
T  35922581 tacac--------atagtcacatattccacctatgaatgcaagactcctcctaaaatgcacgactctaatgcaagcacacaaatcatcaccactcacatc 35922490  T
Q  219 atcatcataga 229  Q
    |||||||||||    
T  35922489 atcatcataga 35922479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 16858604 - 16858698
Alignment:
Q  136 tcacataacccacatattaatgcaagacttc-ccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcataga 229  Q
    |||||||| |||||||||||||||||||| | ||||||||||||| || ||| | ||||||||||||  || || |||||| |||||||||||||    
T  16858604 tcacataatccacatattaatgcaagactcctccctaaaatgcacaactctaatacaaacacacaaatcatcactactctcatcatcatcataga 16858698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 23656751 - 23656678
Alignment:
Q  128 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 201  Q
    ||||||| ||| ||||  ||||||||||||||||||| || ||||||||||| || ||| ||||||||||||||    
T  23656751 acacatattcaaataattcacatattaatgcaagactcccactaaaatgcacaactctaatgcaaacacacaaa 23656678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 44586826 - 44586731
Alignment:
Q  32 ctggacttttctcccacatca-tgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaa 127  Q
    |||||||||||||  |||||| |||| ||||||||||||||||||||||||| ||  || ||| || |||| |||||||||  |||||| |||||||    
T  44586826 ctggacttttctcg-acatcaatgcacgacaccatgctctagactctatatgaacgtaaagaattaaattcgacaagtattacacatatccacttaa 44586731  T

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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 9190731 - 9190945
Alignment:
Q  19 cagaagtatggtgctggacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattggacata 118  Q
    |||||||||| |  || ||||||||||||||||||||||||||||||| | || ||||||||||| ||||| ||| || ||||| ||||||||| |||||    
T  9190731 cagaagtatgttagtgaacttttctcccacatcatgcaagacaccatgttataaactctatatgg-cacaaggaaataaattcagcaagtattgcacata 9190829  T
Q  119 tacacttaaacacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctc 218  Q
    |||||||||||||||   ||||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| ||| |||| |||||| |||    
T  9190830 tacacttaaacacat---cacataatccacatattaatgcaagactccccttaaaatgcacgactctattgcaaacacacgaaacattatcactctactc 9190926  T
Q  219 atcatcatagataaacatt 237  Q
    |||||||||||||||||||    
T  9190927 atcatcatagataaacatt 9190945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 7848192 - 7848392
Alignment:
Q  19 cagaagtatggtgctggacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattggacata 118  Q
    |||||||||| |  || ||||||||||||||| |||||||||   ||||||||||||||||||| || ||| ||| || |||| |||||||||  |||||    
T  7848192 cagaagtatgttagtgaacttttctcccacat-atgcaagactt-atgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacata 7848289  T
Q  119 tacacttaaacacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctc 218  Q
    |||||        |||||||||||  |||| ||| ||||||||| | | ||||||||||||||| ||| | ||| ||||||||  || ||||||  | ||    
T  7848290 tacac--------atagtcacatattccacctatgaatgcaagagtcctcctaaaatgcacgactctaatacaagcacacaaatcatcaccactgacatc 7848381  T
Q  219 atcatcataga 229  Q
    |||||||||||    
T  7848382 atcatcataga 7848392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 10641612 - 10641512
Alignment:
Q  136 tcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaa---tattaccactctcctcatcatcatagataa 232  Q
    |||||||| ||||||| |||||||||| || |||||||||||||||  ||| ||||| |||||||||    || ||||||||| ||| ||||||||||||    
T  10641612 tcacataatccacatactaatgcaagattttccctaaaatgcacgaatctaatgcaagcacacaaaacatcatcaccactctcatcagcatcatagataa 10641513  T
Q  233 a 233  Q
    |    
T  10641512 a 10641512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 21083727 - 21083655
Alignment:
Q  128 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaa 200  Q
    ||||||| ||| ||||  |||||||||||||||||||| | |||||||||||||| ||| ||||| |||||||    
T  21083727 acacatattcaaataattcacatattaatgcaagactttcactaaaatgcacgactctaatgcaagcacacaa 21083655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 14745399 - 14745488
Alignment:
Q  19 cagaagtatggtgctggacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagta 109  Q
    |||||||||  | ||||||||||||||| ||| ||||||||||  |||||||||||||||||||||| ||   || ||| |||||||||||    
T  14745399 cagaagtatattactggacttttctcccgcat-atgcaagacattatgctctagactctatatggacgcatgaaattattttcaacaagta 14745488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 21038104 - 21038032
Alignment:
Q  128 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaa 200  Q
    ||||||| ||| ||||  |||||||||||||||||||  | |||||||||||||| ||| ||||| |||||||    
T  21038104 acacatattcaaataattcacatattaatgcaagactctcactaaaatgcacgactctaatgcaagcacacaa 21038032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 226
Target Start/End: Original strand, 24757320 - 24757469
Alignment:
Q  67 ctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttc 166  Q
    ||||||||| ||||||| ||||| ||  || ||||||||||||||| |||||||||||||| |||||||          |||||||||||||||||||      
T  24757320 ctctagactttatatggccacaaggacataaattcaacaagtattgtacatatacacttaaccacatag----------cacatattaatgcaagactct 24757409  T
Q  167 ccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcat 226  Q
    |||||||||||||||| |||||||||  |||||||| |||||||||| | ||| ||||||    
T  24757410 ccctaaaatgcacgactctattgcaagaacacaaaacattaccactcccttcaccatcat 24757469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 226
Target Start/End: Original strand, 24615160 - 24615309
Alignment:
Q  67 ctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttc 166  Q
    ||||||||| || |||| ||||| ||  || ||||| ||||||||| |||||||||||||| |||||||          |||||||||||||||||||      
T  24615160 ctctagactttaaatggccacaaggacataaattcagcaagtattgtacatatacacttaaccacatag----------cacatattaatgcaagactct 24615249  T
Q  167 ccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcat 226  Q
    | |||||||||||||| |||||||||  |||||||| |||||||||| | ||| ||||||    
T  24615250 ctctaaaatgcacgactctattgcaagaacacaaaacattaccactcccttcaccatcat 24615309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 226
Target Start/End: Original strand, 24711558 - 24711707
Alignment:
Q  67 ctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttc 166  Q
    ||||||||| || |||| ||||| ||  || ||||| ||||||||| |||||||||||||| |||||||          |||||||||||||||||||      
T  24711558 ctctagactttaaatggccacaaggacataaattcagcaagtattgtacatatacacttaaccacatag----------cacatattaatgcaagactct 24711647  T
Q  167 ccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcat 226  Q
    | |||||||||||||| |||||||||  |||||||| |||||||||| | ||| ||||||    
T  24711648 ctctaaaatgcacgactctattgcaagaacacaaaacattaccactcccttcaccatcat 24711707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 226
Target Start/End: Original strand, 24744554 - 24744703
Alignment:
Q  67 ctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttc 166  Q
    ||||||||| || |||| ||||| ||  || ||||| ||||||||| |||||||||||||| |||||||          |||||||||||||||||||      
T  24744554 ctctagactttaaatggccacaaggacataaattcagcaagtattgtacatatacacttaaccacatag----------cacatattaatgcaagactct 24744643  T
Q  167 ccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcat 226  Q
    | |||||||||||||| |||||||||  |||||||| |||||||||| | ||| ||||||    
T  24744644 ctctaaaatgcacgactctattgcaagaacacaaaacattaccactcccttcaccatcat 24744703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 13935430 - 13935597
Alignment:
Q  52 atgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacata 151  Q
    ||||| |||| |||||||||||||||||||| |||||| ||| || |||| |||||||        |||||  || ||||| |||||||||| |||||||    
T  13935430 atgcacgacatcatgctctagactctatatgaacacaaagaattaaattcgacaagta--------atacatgtatacacaaagtcacataatccacata 13935521  T
Q  152 ttaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcata 227  Q
    ||||||||| |||| ||||||||| ||| ||  ||  |||| ||||||||  |  ||||||||| |||||||||||    
T  13935522 ttaatgcaaaactttccctaaaatccacaactgtaaggcaagcacacaaatcaccaccactctcatcatcatcata 13935597  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 6821203 - 6821357
Alignment:
Q  18 tcagaagtatggtgctggacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattggacat 117  Q
    ||||||||||| | ||||| ||||||||||||| |||||||||   ||||||||||||||||||| || ||| ||| || |||| ||||||||           
T  6821203 tcagaagtatgttactggaattttctcccacat-atgcaagactt-atgctctagactctatatgaacgcaaggaattaaattcgacaagtat------- 6821293  T
Q  118 atacacttaaacacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgac 182  Q
     ||||| || |||||||||||||||  |||| ||| ||||||||||| |||||||||||||||||    
T  6821294 -tacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgcacgac 6821357  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 9564155 - 9564241
Alignment:
Q  146 cacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcatagataa 232  Q
    |||||||||||| |||||| ||||||| ||||||||| ||| ||||||||||||||  || || |||||| ||||||||||||||||    
T  9564155 cacatattaatgtaagactccccctaatatgcacgactctaatgcaaacacacaaatcatcacaactctcatcatcatcatagataa 9564241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 11936278 - 11936346
Alignment:
Q  137 cacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatat 205  Q
    ||||||| ||||||||||||| |||||  ||||||| ||||||||| ||| ||||| ||||||||||||    
T  11936278 cacataatccacatattaatgtaagacaccccctaagatgcacgactctaatgcaagcacacaaaatat 11936346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 15873247 - 15873166
Alignment:
Q  146 cacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcata 227  Q
    |||||||||||||||||||  | |||||||||||||| ||| ||||| ||||||||  |||| ||  ||| |||||||||||    
T  15873247 cacatattaatgcaagactctcactaaaatgcacgactctaatgcaagcacacaaatcattaacatactcatcatcatcata 15873166  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 11555762 - 11555866
Alignment:
Q  52 atgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacata 151  Q
    ||||| ||||||||||||||||||| ||||| ||  || ||| || |||| |||||||||  || |||||||||||        ||||||||||||||||    
T  11555762 atgcacgacaccatgctctagactcaatatgaacgtaaagaattaaattcgacaagtattacacgtatacacttaa--------tcacataacccacata 11555853  T
Q  152 ttaatgcaagact 164  Q
    |||||||| ||||    
T  11555854 ttaatgcacgact 11555866  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 12136853 - 12136899
Alignment:
Q  146 cacatattaatgcaagacttcccctaaaatgcacgacactattgcaa 192  Q
    ||||||||||||||||||| || |||||||||||||| ||| |||||    
T  12136853 cacatattaatgcaagactcccactaaaatgcacgactctaatgcaa 12136899  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 22615021 - 22614921
Alignment:
Q  136 tcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaa---tattaccactctcctcatcatcatagataa 232  Q
    ||||||||  ||||||||||||||||| ||||| ||||||||||||| ||| ||||| |||||||||    || ||||||||| ||||||||||||||||    
T  22615021 tcacataattcacatattaatgcaagatttcccataaaatgcacgactctaatgcaagcacacaaaacatcatcaccactctcatcatcatcatagataa 22614922  T
Q  233 a 233  Q
    |    
T  22614921 a 22614921  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 11655311 - 11655411
Alignment:
Q  136 tcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaa---tattaccactctcctcatcatcatagataa 232  Q
    ||||||||  |||||| |||||||||| || || ||||||||||||| ||| ||||| |||| ||||    || ||||||||| ||||||||||||||||    
T  11655311 tcacataattcacatactaatgcaagattttccataaaatgcacgactctaatgcaagcacaaaaaacatcatcaccactctcatcatcatcatagataa 11655410  T
Q  233 a 233  Q
    |    
T  11655411 a 11655411  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 13477763 - 13477664
Alignment:
Q  138 acataacccacatattaa-tgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaata---ttaccactctcctcatcatcatagataaa 233  Q
    |||||||||||||||||| ||||||  | ||||||||||| ||||| ||  ||||| ||||||||| |   | ||||||||| |||||||||||||||||    
T  13477763 acataacccacatattaaatgcaagtatccccctaaaatgaacgactctgatgcaagcacacaaaacaccatcaccactctcatcatcatcatagataaa 13477664  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 11655236 - 11655272
Alignment:
Q  52 atgcaagacaccatgctctagactctatatggacaca 88  Q
    |||||||||| |||||||||||||||| |||||||||    
T  11655236 atgcaagacatcatgctctagactctacatggacaca 11655272  T

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Target: scaffold1001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 1226 - 1326
Alignment:
Q  136 tcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaa---aatattaccactctcctcatcatcatagataa 232  Q
    |||||||| ||||| | |||| ||||| ||||||||||||||| |||  || ||||| |||||||   || || ||||||||| ||||||||||||||||    
T  1226 tcacataatccacagactaatacaagatttcccctaaaatgcatgactataatgcaagcacacaaaacaacatcaccactctcatcatcatcatagataa 1325  T
Q  233 a 233  Q
    |    
T  1326 a 1326  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 16362963 - 16362890
Alignment:
Q  128 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 201  Q
    ||||||| ||| ||||  |||||||||||||||||||  | |||||||||||||| ||| ||||| ||||||||    
T  16362963 acacatattcaaataattcacatattaatgcaagactctcactaaaatgcacgactctaatgcaagcacacaaa 16362890  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 21974983 - 21975056
Alignment:
Q  128 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 201  Q
    ||||||| ||| ||||  |||||||||||||||||||  | |||||||||||||| ||| ||||| ||||||||    
T  21974983 acacatattcaaataattcacatattaatgcaagactctcactaaaatgcacgactctaatgcaagcacacaaa 21975056  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 21997414 - 21997487
Alignment:
Q  128 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 201  Q
    ||||||| ||| ||||  |||||||||||||||||||  | |||||||||||||| ||| ||||| ||||||||    
T  21997414 acacatattcaaataattcacatattaatgcaagactctcactaaaatgcacgactctaatgcaagcacacaaa 21997487  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 22159558 - 22159609
Alignment:
Q  146 cacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacaca 197  Q
    |||||||||||||||||||  | |||||||||||||| ||| ||||||||||    
T  22159558 cacatattaatgcaagactctcactaaaatgcacgactctaatgcaaacaca 22159609  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 13927226 - 13927154
Alignment:
Q  128 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaa 200  Q
    ||||||| ||| ||||  ||||||||| ||||||||| || ||||||||||| || ||| ||||| |||||||    
T  13927226 acacatattcaaataattcacatattagtgcaagactcccactaaaatgcacaactctaatgcaagcacacaa 13927154  T

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Target: scaffold0737 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 3985 - 3930
Alignment:
Q  146 cacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 201  Q
    |||||||||||| |||||| || |||||||||||||| ||| ||||| ||||||||    
T  3985 cacatattaatgtaagactcccactaaaatgcacgactctaatgcaagcacacaaa 3930  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 15541198 - 15541252
Alignment:
Q  128 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgac 182  Q
    |||| ||||||||||| ||||||||||||  |||| | |||||||||||||||||    
T  15541198 acacctagtcacataatccacatattaattgaagagtccccctaaaatgcacgac 15541252  T

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Target: scaffold0385 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 13972 - 14045
Alignment:
Q  128 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 201  Q
    ||||||| ||| ||||  |||||||||||| ||||||  | |||||||||||||| ||| ||||| ||||||||    
T  13972 acacatattcaaataattcacatattaatggaagactctcactaaaatgcacgactctaatgcaagcacacaaa 14045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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