View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16398_high_9 (Length: 260)

Name: NF16398_high_9
Description: NF16398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16398_high_9
NF16398_high_9
[»] chr7 (3 HSPs)
chr7 (17-245)||(5568564-5568792)
chr7 (17-245)||(35611339-35611564)
chr7 (17-245)||(3614981-3615209)
[»] scaffold1903 (1 HSPs)
scaffold1903 (17-245)||(449-676)
[»] chr4 (3 HSPs)
chr4 (17-245)||(9981344-9981572)
chr4 (79-245)||(46355873-46356033)
chr4 (84-245)||(20855476-20855631)
[»] chr3 (2 HSPs)
chr3 (17-245)||(33130206-33130440)
chr3 (78-245)||(54670811-54670967)
[»] chr2 (1 HSPs)
chr2 (17-245)||(15480336-15480570)
[»] chr8 (1 HSPs)
chr8 (84-245)||(14735280-14735435)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 5568792 - 5568564
Alignment:
Q  17 tcatcaaatgggtcattcactgataactctttttcattccatttgaattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagata 116  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||    
T  5568792 tcatcaaatgggtcactcactaataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttactttatgaaaaactagata 5568693  T
Q  117 aaaatgttcatattaatctcaaaaaacatgaacaagatgaagttgttgatggcaatggtgaagaagaaggttaaacaattaatttcatgggtaggcctat 216  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||    
T  5568692 aaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtaggcctat 5568593  T
Q  217 ttgtttcatgaggagattagagaaagaaa 245  Q
    |||||||| ||||||||||||| ||||||    
T  5568592 ttgtttcaagaggagattagaggaagaaa 5568564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 35611564 - 35611339
Alignment:
Q  17 tcatcaaatgggtcattcactgataactctttttcattccatttgaattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35611564 tcatcaaatgggtcattcactgataactctttttcattccatttgaattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagata 35611465  T
Q  117 aaaatgttcatattaatctcaaaaaacatgaacaagatgaagttgttgatggcaatggtgaagaagaaggttaaacaattaatttcatgggtaggcctat 216  Q
    ||||||||||| ||||||||| |||||| ||||| |||||||||||||||||  ||||||||   ||||||||||||||| ||||||||||||  | |||    
T  35611464 aaaatgttcatgttaatctcataaaacaagaacaggatgaagttgttgatggtgatggtgaa---gaaggttaaacaattgatttcatgggtaaacttat 35611368  T
Q  217 ttgtttcatgaggagattagagaaagaaa 245  Q
    |||||||||||||||||||||| ||||||    
T  35611367 ttgtttcatgaggagattagaggaagaaa 35611339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 3614981 - 3615209
Alignment:
Q  17 tcatcaaatgggtcattcactgataactctttttcattccatttgaattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagata 116  Q
    |||||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3614981 tcatcaaatgagtcactcactggtaactccttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaaccagata 3615080  T
Q  117 aaaatgttcatattaatctcaaaaaacatgaacaagatgaagttgttgatggcaatggtgaagaagaaggttaaacaattaatttcatgggtaggcctat 216  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||||||||||  |||||||||||||||||||||||||| |||| ||||||||||||||    
T  3615081 aaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgattttatgggtaggcctat 3615180  T
Q  217 ttgtttcatgaggagattagagaaagaaa 245  Q
    |||||||| |||||||| |||| ||||||    
T  3615181 ttgtttcaagaggagatcagaggaagaaa 3615209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 676 - 449
Alignment:
Q  17 tcatcaaatgggtcattcactgataactctttttcattccatttgaattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagata 116  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  676 tcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaacca-ata 578  T
Q  117 aaaatgttcatattaatctcaaaaaacatgaacaagatgaagttgttgatggcaatggtgaagaagaaggttaaacaattaatttcatgggtaggcctat 216  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||||||||||  ||||||||||||||| |||||||||| ||||||||||||||| |||    
T  577 aaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaagattaaacaattgatttcatgggtaggcatat 478  T
Q  217 ttgtttcatgaggagattagagaaagaaa 245  Q
    |||||||| ||||||||||||| ||||||    
T  477 ttgtttcaagaggagattagaggaagaaa 449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 9981572 - 9981344
Alignment:
Q  17 tcatcaaatgggtcattcactgataactctttttcattccatttgaattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagata 116  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||    
T  9981572 tcatcaaatgggtcactcaccgataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaatcacata 9981473  T
Q  117 aaaatgttcatattaatctcaaaaaacatgaacaagatgaagttgttgatggcaatggtgaagaagaaggttaaacaattaatttcatgggtaggcctat 216  Q
    ||||||||||| ||||||||| |||| | ||||| |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||    
T  9981472 aaaatgttcatgttaatctcataaaataagaacaggatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtaggcctat 9981373  T
Q  217 ttgtttcatgaggagattagagaaagaaa 245  Q
    |||||||| ||||||||||||| ||||||    
T  9981372 ttgtttcaagaggagattagaggaagaaa 9981344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 79 - 245
Target Start/End: Original strand, 46355873 - 46356033
Alignment:
Q  79 ttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatattaatctcaaaaaacatgaacaagatgaa-gttgttgatggcaatggtga 177  Q
    |||||||| ||||| ||| |||||| ||||| |||||||||||  |||| ||||||||  |||||| ||| ||||| || |||||||||||      |||    
T  46355873 ttctcttttatggcgttt-cttcattaaaaatcagataaaaataatcatgttaatctcgtaaaacaagaataagattaaagttgttgatgg------tga 46355965  T
Q  178 agaagaaggttaaacaattaatttcatgggtaggcctatttgtttcatgaggagattagagaaagaaa 245  Q
    |||||| |||||||||||| |||| |||||||||||| ||||||||| ||||||||||||| ||||||    
T  46355966 agaagatggttaaacaattgattttatgggtaggcctttttgtttcacgaggagattagaggaagaaa 46356033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 245
Target Start/End: Original strand, 20855476 - 20855631
Alignment:
Q  84 tttcatggcatttacttcatgaaaaaccagataaaaatgttcatattaatctcaaaaaacatgaacaagatgaa-gttgttgatggcaatggtgaagaag 182  Q
    ||||||||| ||| |||||| ||||| |||||||||||  |||| ||||||||| ||||||  || ||||| || |||||||||||      ||||||||    
T  20855476 tttcatggcgttt-cttcattaaaaatcagataaaaataatcatgttaatctcataaaacaaaaataagattaaagttgttgatgg------tgaagaag 20855568  T
Q  183 aaggttaaacaattaatttcatgggtaggcctatttgtttcatgaggagattagagaaagaaa 245  Q
    | |||||||||||| |||||||| |||||||| ||||||||| ||||||||||||| ||||||    
T  20855569 atggttaaacaattgatttcatgtgtaggcctttttgtttcacgaggagattagaggaagaaa 20855631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 33130206 - 33130440
Alignment:
Q  17 tcatcaaatgggtcattcactgataactctttttcattccatttgaattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagata 116  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||||||||| |    
T  33130206 tcatcaaatgggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcctggcgtttacttcatgaaaaaccagaca 33130305  T
Q  117 aaaatgttcatattaatctca------aaaaacatgaacaagatgaagttgttgatggcaatggtgaagaagaaggttaaacaattaatttcatgggtag 210  Q
    | ||||||||| |||||||||      || |||| |||||||||||||||||||||||   |||||||||||||||| |||||||| |||| ||||||||    
T  33130306 acaatgttcatcttaatctcatcaaacaagaacaggaacaagatgaagttgttgatggtgttggtgaagaagaaggtgaaacaattgattttatgggtag 33130405  T
Q  211 gcctatttgtttcatgaggagattagagaaagaaa 245  Q
     ||||||||||||| ||||||||||||| ||||||    
T  33130406 acctatttgtttcaagaggagattagaggaagaaa 33130440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 245
Target Start/End: Complemental strand, 54670967 - 54670811
Alignment:
Q  78 cttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatattaatctcaaaaaacatgaacaagatgaagttgttgatggcaatggtga 177  Q
    ||||||||||||||  |||||||||| |||||||||||||||||  |||| ||||||||| |||||| ||| ||| | ||   |||||| |             
T  54670967 cttctctttcatggtgtttacttcattaaaaaccagataaaaatagtcatgttaatctcataaaacaagaataagtttaaa--gttgattgt-------- 54670878  T
Q  178 agaagaaggttaaacaattaatttcatgggtaggcctatttgtttcatgaggagattagagaaagaaa 245  Q
     |||||| ||||||||||| |||||||||||||| || ||||||||| ||||||||||||| ||||||    
T  54670877 -gaagaaagttaaacaattgatttcatgggtagggctttttgtttcacgaggagattagaggaagaaa 54670811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 15480570 - 15480336
Alignment:
Q  17 tcatcaaatgggtcattcactgataactctttttcattccatttgaattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagata 116  Q
    ||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||  ||||||||||||||||||||| |    
T  15480570 tcatcaaatgggtgactcgctgataactctttttcattccatttgaattcaaaaccaaacccttctatttaatggtgtttacttcatgaaaaaccagaca 15480471  T
Q  117 aaaatgttcatattaatctcaa------aaaacatgaacaagatgaagttgttgatggcaatggtgaagaagaaggttaaacaattaatttcatgggtag 210  Q
    | ||||||||| ||||| | ||      |||||| |||||||||||||||||||||||  |||||||||| |||||| |||||||| ||||| |||||||    
T  15480470 acaatgttcatgttaatgttaatatcttaaaacaagaacaagatgaagttgttgatggtgatggtgaagaggaaggtgaaacaattgatttcttgggtag 15480371  T
Q  211 gcctatttgtttcatgaggagattagagaaagaaa 245  Q
     ||||||||||||| ||||||||| ||| ||||||    
T  15480370 acctatttgtttcaagaggagattggaggaagaaa 15480336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 245
Target Start/End: Original strand, 14735280 - 14735435
Alignment:
Q  84 tttcatggcatttacttcatgaaaaaccagataaaaatgttcatattaatctcaaaaaacatgaacaagatgaa-gttgttgatggcaatggtgaagaag 182  Q
    ||||||||| ||| |||||| ||||| ||||||||||| ||||| ||||||||| |||||  ||| ||||| || ||||||||||       ||||||||    
T  14735280 tttcatggcgttt-cttcattaaaaatcagataaaaatattcatgttaatctcataaaaccagaataagattaaagttgttgatga------tgaagaag 14735372  T
Q  183 aaggttaaacaattaatttcatgggtaggcctatttgtttcatgaggagattagagaaagaaa 245  Q
    | |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  14735373 atggttaaacaattgatttcatgggtaggcctttttgtttcacgaggagattagaggaagaaa 14735435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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