View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16398_low_1 (Length: 718)
Name: NF16398_low_1
Description: NF16398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16398_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 635; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 21 - 704
Target Start/End: Complemental strand, 3218261 - 3217578
Alignment:
| Q |
21 |
atcggaagatacattctgatacattgaagagattttgagcaaacatgtggtacaaaacaattttcttccttgtgaacatgttttctcttgagcccacgtt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3218261 |
atcggaagatacattctgatacattgaagagattttgagcaaacatgtggtacagaacaattttcttccttgtgaacgtgttttctcttgagcccacgtt |
3218162 |
T |
|
| Q |
121 |
gaatagtcattatgaagtgaagtgtggaccatagattatatagtatcttgctcctcaagactctttcaacatcaaattgctgcttgtatttttctctcat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3218161 |
gaatagtcattatgaagtgaagtgtggaccatagattatatagtatcttgctcctcaagactctttcaacatcaaattgctgcttgtatttttctctcat |
3218062 |
T |
|
| Q |
221 |
ccttttcaagtgttccaatcacaaggccccacnnnnnnnaacttcaaaatctctacatggactcactccagaaactagacctctcagtttttatatttct |
320 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3218061 |
ccttttcaagtgttccaatcacaaggccccactttctttaacttcaaaatctctacatggactcactccagaaactagacctctcagtttttatatttct |
3217962 |
T |
|
| Q |
321 |
caatcttagtttccatgcagataaccactagttttcgtagtttgttatcctaactcgaggactaaattgtatagagagtggtggtatttctctcttctct |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217961 |
caatcttagtttccatgcagataaccactagttttcgtagtttgttatcctaactcaaggactaaattgtatagagagtggtggtatttctctcttctct |
3217862 |
T |
|
| Q |
421 |
aataccaattaagcacacatggttgtttgatagtgcgtataataagtgtcagttgtgcattgttgaggacttctccatctgaaatgaaatataagtaaaa |
520 |
Q |
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| T |
3217861 |
aataccaattaagcacacatgcttgtttgatagtgcgtataataagtgtcagttgtgtattgttgaggacttctccatctgaaatgaaatataagtaaaa |
3217762 |
T |
|
| Q |
521 |
atagtttatagtatttagaataaaatatgagcaaaagttaaagacttctcttatattgaatgatagtacttctaaattatacctcagtttatttaattaa |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217761 |
atagtttatagtatttagaataaaatatgagcaaaagttaaagacttctcttatattgaatgatagtacttctaaattatacctcagtttatttaattaa |
3217662 |
T |
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| Q |
621 |
cttatcatatttaatcatttttgcttctaaattcccttaatcttcagtaattccctatgtacgattatcatttacacacatgcc |
704 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3217661 |
cttatcatatttaatcatttttgcttctaatttcccttaatcttcagtaattccctatgtacgattatcattaacacacatgcc |
3217578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 3223169 - 3223115
Alignment:
| Q |
290 |
agaaactagacctctcagtttttatatttctcaatcttagtttccatgcagataa |
344 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3223169 |
agaagctagacctctcagtttatatatttctcaatcttagtttccatgcagataa |
3223115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 3223230 - 3223175
Alignment:
| Q |
197 |
ttgctgcttgtatttttctctcatccttttcaagtgttccaatcacaaggccccac |
252 |
Q |
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||||||||||||||||||| ||||||||||| | | |||||| |||||||||||| |
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| T |
3223230 |
ttgctgcttgtatttttctttcatccttttccaatattccaactacaaggccccac |
3223175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 86 - 345
Target Start/End: Original strand, 49664619 - 49664876
Alignment:
| Q |
86 |
ttccttgtgaacatgttttctcttgagcccac-gttgaatagtcattatgaagtgaagtgtggaccatagattatatagtatcttgctcctcaagactct |
184 |
Q |
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|||||||||||| ||||||| ||| |||| ||||||||||| ||||||||||||||||| |||| |||||| || |||| ||| ||||||||| |
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| T |
49664619 |
ttccttgtgaacgcgttttcttttgggccctttgttgaatagtc-ttatgaagtgaagtgtgaaccaaagattagt--gtgtcttattccccaagactct |
49664715 |
T |
|
| Q |
185 |
ttcaacatcaaattgctgcttgtatttttctctcatccttttcaagtgttccaatcacaaggccccacnnnnnnnaacttcaaaatctctacatggactc |
284 |
Q |
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|||||| |||||||||||||||| |||||||| |||||||||| ||| || ||| |||| |||||||| | || ||||| ||| |||||||| |
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| T |
49664716 |
ttcaacgtcaaattgctgcttgtttttttctcccatccttttccagtatttcaaccacatggccccactttattaacttttaaaatttcttcatggacta |
49664815 |
T |
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| Q |
285 |
actccagaaactagacctctcagtttttatatttctcaatcttagtttccatgcagataac |
345 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
49664816 |
actccagaatctagacctctcagttttgatatttctcaatcttagtttccatgcatataac |
49664876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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