View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16398_low_12 (Length: 255)
Name: NF16398_low_12
Description: NF16398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16398_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 13967876 - 13968025
Alignment:
| Q |
1 |
tctcaagtttgtatatgttattgttttatttctatcccttttccttgctacaaaaaacattgatggtagtatatttattcatccttttttaaatttcctt |
100 |
Q |
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| T |
13967876 |
tctcaagtttgtatatgttattgttttatttctatcccttttccttgctacaaaaaacattgatggtagtatatttattcatccttttttaaatatcctt |
13967975 |
T |
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| Q |
101 |
atttagtttgtagttagtatacaatattttatcttattttagtaacattg |
150 |
Q |
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| T |
13967976 |
atttagtttgtagttagtatacaatattttatcttattttagtaacattg |
13968025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 13968086 - 13968115
Alignment:
| Q |
211 |
agtgcatcatgcgcttgatacattcattat |
240 |
Q |
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| T |
13968086 |
agtgcatcatgcgcttgatacattcattat |
13968115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 4021424 - 4021275
Alignment:
| Q |
1 |
tctcaagtttgtatatgttattgttttatttctatcccttttccttgctacaaaaaacattgatggtagtatatttattcatccttttttaaatttcctt |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4021424 |
tctcaagtttgtgtatgttattgttttatttctatcccttttccttgctgcaaaaaacattgatggtagtatatttattcatccttttttaaatttcctt |
4021325 |
T |
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| Q |
101 |
atttagtttgtagttagtatacaatattttatcttattttagtaacattg |
150 |
Q |
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| T |
4021324 |
atttagtttgtagttagtatacaatattttatcttattttagtaacattg |
4021275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 17829343 - 17829248
Alignment:
| Q |
5 |
aagtttgtatatgttattgttttatttctatcccttttccttgctacaaaaaacattgatggtagtatatttattcatccttttttaaatttcctt |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||| | |||| |||||||| ||| ||||||||||| ||||||||| |||||||||| |
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| T |
17829343 |
aagtttgtgtatgttattgttttatttctatccctttttcttgttgcaaagaacattgacggtggtatatttatttatcctttttcaaatttcctt |
17829248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 17829233 - 17829164
Alignment:
| Q |
81 |
atccttttttaaatttccttatttagtttgtagttagtatacaatattttatcttattttagtaacattg |
150 |
Q |
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| T |
17829233 |
atcctttttcaaatttccttttttggtttgtagtttgtatacaatattttattttattttagtgacattg |
17829164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 6962433 - 6962497
Alignment:
| Q |
85 |
ttttttaaatttccttatttagtttgtagttagtatacaatattttatcttattttagtaacatt |
149 |
Q |
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| T |
6962433 |
tttttcaaattttcttatttactttgttgtttgtatacaatattttatcttgttttattaacatt |
6962497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 17828938 - 17828889
Alignment:
| Q |
83 |
ccttttttaaatttccttatttagtttgtagttagtatacaatattttat |
132 |
Q |
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||||||| ||||||||||||||||||| ||||| || |||||||||||| |
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| T |
17828938 |
cctttttaaaatttccttatttagtttttagttcatacacaatattttat |
17828889 |
T |
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