View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16398_low_2 (Length: 430)
Name: NF16398_low_2
Description: NF16398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16398_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Original strand, 41878405 - 41878806
Alignment:
| Q |
14 |
gaagacccaaatagtgtgtagaaaatgaatgaacatgttaattaatatgatcaatcttattacttacacgtgacagtgcatagctgtgtcacgtagcata |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41878405 |
gaagacccaaatagtgtgtagaaaatgaatgaacatgttaattaatatgatcaatcttattacttacacgtgacagtgcatagctgtgtcacgtagcata |
41878504 |
T |
|
| Q |
114 |
gaattttctagcaaatacaagaattctcaacctatattacttccagcacattctaactttgtattgtataaacctcctataaataaaaaccaccttacac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41878505 |
gaattttctagcaaatacaagaattctcaacctatattacttccagcacattctaactttgtattgtataaacctcctataaataaaaaccaccttgcac |
41878604 |
T |
|
| Q |
214 |
tttgtattttatgacatacatcataaacataaat-aactttctttgtagcaagcaacaatgaagccaatcgacgagaaacaagagacggtaacaataaga |
312 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41878605 |
tttgtattgtataacatacatcataaacataaataaactttctttgtagcaagcagcaatgaagccaatcgacgagaaacaagagacggtaacaataaga |
41878704 |
T |
|
| Q |
313 |
gcagtgagtcacgacgaagaaggaaaaaagagagttgaaaaaacagaactcaacacacacaacatagacacaatcaaacatgtggagaagaaactcatca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41878705 |
gcagtgagtcacgacgaagaaggaaaaaagagagttgaaaaaacagaactaaacacacacaacatagacacaatcaaacatgtggagaagaaactcatca |
41878804 |
T |
|
| Q |
413 |
ac |
414 |
Q |
| |
|
|| |
|
|
| T |
41878805 |
ac |
41878806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University