View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16398_low_4 (Length: 405)

Name: NF16398_low_4
Description: NF16398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16398_low_4
NF16398_low_4
[»] scaffold0057 (1 HSPs)
scaffold0057 (1-365)||(41021-41384)
[»] chr6 (10 HSPs)
chr6 (54-149)||(9191335-9191430)
chr6 (59-148)||(14989101-14989190)
chr6 (54-148)||(8403526-8403620)
chr6 (287-354)||(22501886-22501953)
chr6 (1-52)||(10906594-10906645)
chr6 (57-148)||(14979989-14980080)
chr6 (1-52)||(19547207-19547258)
chr6 (2-52)||(8403659-8403709)
chr6 (8-51)||(9191240-9191283)
chr6 (2-52)||(14980132-14980182)
[»] chr4 (13 HSPs)
chr4 (248-356)||(25352429-25352537)
chr4 (54-148)||(15872579-15872673)
chr4 (54-148)||(15890171-15890265)
chr4 (58-149)||(11556227-11556318)
chr4 (56-149)||(16284759-16284852)
chr4 (58-148)||(12229192-12229282)
chr4 (56-129)||(17338003-17338078)
chr4 (56-149)||(18231205-18231294)
chr4 (2-52)||(16284906-16284956)
chr4 (1-52)||(18556782-18556833)
chr4 (1-39)||(12229091-12229129)
chr4 (2-52)||(15872724-15872774)
chr4 (2-52)||(15890316-15890366)
[»] chr2 (6 HSPs)
chr2 (50-149)||(32251916-32252015)
chr2 (54-149)||(44586183-44586278)
chr2 (55-149)||(23656183-23656277)
chr2 (2-52)||(24786353-24786403)
chr2 (287-360)||(16767907-16767980)
chr2 (1-45)||(44586336-44586380)
[»] chr3 (22 HSPs)
chr3 (287-357)||(34279567-34279637)
chr3 (57-148)||(16642595-16642686)
chr3 (55-149)||(14481350-14481444)
chr3 (54-148)||(16359310-16359404)
chr3 (1-52)||(5943814-5943865)
chr3 (57-148)||(14054778-14054869)
chr3 (57-148)||(14062507-14062598)
chr3 (2-52)||(14481496-14481546)
chr3 (54-122)||(13926595-13926663)
chr3 (287-353)||(7237770-7237836)
chr3 (57-148)||(4712526-4712617)
chr3 (1-44)||(13926725-13926768)
chr3 (55-149)||(17791186-17791275)
chr3 (55-149)||(19099626-19099715)
chr3 (287-360)||(37508248-37508321)
chr3 (106-150)||(5943685-5943729)
chr3 (1-52)||(27870379-27870430)
chr3 (2-52)||(4712669-4712719)
chr3 (2-52)||(16642493-16642543)
chr3 (1-54)||(21975394-21975447)
chr3 (1-54)||(21997825-21997878)
chr3 (286-330)||(51940774-51940818)
[»] chr5 (13 HSPs)
chr5 (287-354)||(8726164-8726231)
chr5 (287-354)||(31698289-31698356)
chr5 (54-148)||(13936008-13936102)
chr5 (287-354)||(42838134-42838201)
chr5 (2-52)||(24831896-24831946)
chr5 (1-53)||(23960791-23960843)
chr5 (96-147)||(17458275-17458326)
chr5 (1-52)||(24615621-24615672)
chr5 (1-52)||(24712019-24712070)
chr5 (1-52)||(24745015-24745066)
chr5 (1-52)||(24757781-24757832)
chr5 (55-149)||(24831749-24831844)
chr5 (1-46)||(13935906-13935951)
[»] chr8 (4 HSPs)
chr8 (55-149)||(29294160-29294254)
chr8 (58-148)||(23658833-23658923)
chr8 (2-52)||(29294058-29294108)
chr8 (2-52)||(23658730-23658780)
[»] chr7 (10 HSPs)
chr7 (57-148)||(15867004-15867095)
chr7 (57-148)||(16060810-16060902)
chr7 (1-52)||(37945692-37945743)
chr7 (287-354)||(24768355-24768422)
chr7 (54-149)||(37945547-37945641)
chr7 (55-133)||(4531496-4531574)
chr7 (2-52)||(20026179-20026229)
chr7 (287-360)||(36962953-36963026)
chr7 (2-52)||(16060708-16060758)
chr7 (2-52)||(48376983-48377033)
[»] chr1 (6 HSPs)
chr1 (57-148)||(13881983-13882074)
chr1 (68-148)||(51626720-51626800)
chr1 (5-52)||(1566937-1566984)
chr1 (54-116)||(15541993-15542055)
chr1 (54-104)||(1566836-1566886)
chr1 (2-52)||(13882126-13882176)
[»] scaffold0737 (1 HSPs)
scaffold0737 (55-149)||(3393-3487)
[»] scaffold1269 (2 HSPs)
scaffold1269 (57-148)||(276-365)
scaffold1269 (2-52)||(174-224)
[»] scaffold0319 (2 HSPs)
scaffold0319 (57-148)||(13296-13387)
scaffold0319 (2-52)||(13439-13489)
[»] scaffold0218 (1 HSPs)
scaffold0218 (57-148)||(14675-14766)
[»] scaffold0003 (2 HSPs)
scaffold0003 (57-148)||(131080-131171)
scaffold0003 (2-52)||(130978-131028)
[»] scaffold0145 (2 HSPs)
scaffold0145 (56-149)||(12865-12958)
scaffold0145 (2-52)||(12761-12811)
[»] scaffold0091 (1 HSPs)
scaffold0091 (68-148)||(29367-29447)
[»] scaffold0290 (1 HSPs)
scaffold0290 (1-52)||(13973-14024)
[»] scaffold0166 (1 HSPs)
scaffold0166 (1-52)||(260-311)
[»] scaffold0094 (1 HSPs)
scaffold0094 (1-52)||(4569-4620)
[»] scaffold0385 (1 HSPs)
scaffold0385 (54-148)||(14515-14609)


Alignment Details
Target: scaffold0057 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 41021 - 41384
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatttttagtctcaagatgttttcttattctttatcattacatacatcgtct 100  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  41021 ctattttattttattattcgttttacggacatactctattctctcatctattcttagtctcaagatgttttcttattctttatcattacatacaacgtct 41120  T
Q  101 cctctctatataactaagttcttcctcaccattgttattaactctttcaactattatttatagggagataaattaaaatatgcccaaataacagtgctaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  41121 cctctctatataactaagttcttcctcaccattgttattaactctttcaactattatttataggtagataaattaaaatacgcccaaataacagtgctaa 41220  T
Q  201 acacctattaacccttaaataattcattgttgtagtaaataaagaacaatgtttcatggataccctttttcttgcacctttcctgcacacatgcccatgt 300  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||    
T  41221 acacctattaacccttaaataattcagttttgtagtaaataaagaacaatgtttcatggataccctttttcttgcacctctcttgtacacatgcccatgt 41320  T
Q  301 ggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcacatgtccatgtc 365  Q
    ||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||||||    
T  41321 ggatggcagttatgtaatattgttaaaaagtcaggggtaaaaatgag-tttcacatgtccatgtc 41384  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 9191335 - 9191430
Alignment:
Q  54 ttagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||||||||||| |||||||||||||    
T  9191335 ttagtttcaagatgttttcttattttttatcattacatacaacgtctcctctttatataactaggttcttcctcaccattgtcattaactctttca 9191430  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 14989190 - 14989101
Alignment:
Q  59 ctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||| ||||||||||||| |||||||||||| ||  |||||| ||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  14989190 ctcaagttgttttcttattcgttatcattacatgcaaagtctccgctctatatatctaggtttttcctcacaattgttattaactctttc 14989101  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 8403620 - 8403526
Alignment:
Q  54 ttagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    ||||||||||||||| |||| |||| ||||||||||||| |  || ||||||||||| ||||| |||||||| |||||| || ||||||||||||    
T  8403620 ttagtctcaagatgtattctaattcattatcattacatataatgtatcctctctatacaactaggttcttccccaccatcgtcattaactctttc 8403526  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 22501886 - 22501953
Alignment:
Q  287 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcac 354  Q
    |||| |||||||||||||||||| |||||||| ||||||||||   |||||||||| |||||||||||    
T  22501886 acacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattgagatttcac 22501953  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10906645 - 10906594
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    ||||||||||||||||||| | |||||||||||||||||||| || ||||||    
T  10906645 ctattttattttattattcgttttacggacatactctattctttcgtctatt 10906594  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 14980080 - 14979989
Alignment:
Q  57 gtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||| |||||||||||||  ||||||||||| ||   ||| |  |||||||| ||| ||| |||||||| ||||||||||||||||||    
T  14980080 gtctcaagttgttttcttattcgctatcattacatgcaaaatcttcgttctatatatctaggtttttcctcacaattgttattaactctttc 14979989  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19547258 - 19547207
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    ||||||||||||||||| ||||| || ||||||| |||||||||||||||||    
T  19547258 ctattttattttattatccatctcacagacataccctattctctcatctatt 19547207  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 8403709 - 8403659
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    ||||||||||||||||||||||||| |||||||||||| |  |||||||||    
T  8403709 tattttattttattattcatcttacagacatactctatcccatcatctatt 8403659  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 9191240 - 9191283
Alignment:
Q  8 attttattattcatcttacggacatactctattctctcatctat 51  Q
    |||||||||||||||||| ||||||| ||||||||||| |||||    
T  9191240 attttattattcatcttatggacataatctattctctcgtctat 9191283  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 14980182 - 14980132
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||||| | ||||| ||||||  ||||||||||||||||    
T  14980182 tattttattttattattccttttacgaacatacaatattctctcatctatt 14980132  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 248 - 356
Target Start/End: Complemental strand, 25352537 - 25352429
Alignment:
Q  248 aatgtttcatggataccctttttcttgcacctttcctgcacacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgag 347  Q
    ||||||| ||| | ||||||||||||| |||| || || ||||||| | |||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  25352537 aatgtttgatgtacaccctttttcttgtacctctcttgtacacatgtctatgtggatggtagttttgtaatattgttaaaaaatcaggggtaaaaatgag 25352438  T
Q  348 atttcacat 356  Q
    |||||||||    
T  25352437 atttcacat 25352429  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 15872673 - 15872579
Alignment:
Q  54 ttagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    ||||||||||||||| |||| |||||||||||||||||| |  |||||||||||||  ||||| |||||||| |||||| || ||||||||||||    
T  15872673 ttagtctcaagatgtattctaattctttatcattacatataatgtctcctctctatccaactaggttcttccccaccatcgtcattaactctttc 15872579  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 15890265 - 15890171
Alignment:
Q  54 ttagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    ||||||||||||||| |||| |||| ||||||||||||| |  |||||||||||||  ||||| |||||||| |||||| || ||||||||||||    
T  15890265 ttagtctcaagatgtattctaattcattatcattacatataatgtctcctctctattcaactaggttcttccccaccatcgtcattaactctttc 15890171  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 11556227 - 11556318
Alignment:
Q  58 tctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    ||||||||||||||||||||| ||||||||||||||| | |  |||| ||| ||||||| ||||||||||| |||||  ||||| |||||||    
T  11556227 tctcaagatgttttcttattcattatcattacatacaacttaccctccctacataactaggttcttcctcagcattgccattaaatctttca 11556318  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 16284852 - 16284759
Alignment:
Q  56 agtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    ||||||||||| ||||||||||| ||||| ||||||||| | |  |||| ||| ||||||| ||||| |||||||||||  |||||||||||||    
T  16284852 agtctcaagatattttcttattcattatcgttacatacaactttccctccctacataactaggttctccctcaccattgccattaactctttca 16284759  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 12229192 - 12229282
Alignment:
Q  58 tctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    ||||||||||| ||||||||| |||||||||| |  |  |||||||||||||| ||||| |||||||| |||||| || |||||| |||||    
T  12229192 tctcaagatgtattcttattcattatcattacctgtaatgtctcctctctatacaactaggttcttccacaccatcgtcattaacgctttc 12229282  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 17338003 - 17338078
Alignment:
Q  56 agtctcaagatgttttcttattctttatcattacatacatcgtctc--ctctctatataactaagttcttcctcac 129  Q
    |||||||||||||| |||||||| || | |||||||| | ||||||  ||||||||||||||| ||||||||||||    
T  17338003 agtctcaagatgttctcttattcattttgattacatataacgtctcctctctctatataactaggttcttcctcac 17338078  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 18231294 - 18231205
Alignment:
Q  56 agtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    ||||||||||||||||||||||| ||||||||||||||| | |     | ||| ||||||| |||||||||||||||||  ||||| |||||||    
T  18231294 agtctcaagatgttttcttattcattatcattacatacaactt----accctacataactaggttcttcctcaccattgccattaattctttca 18231205  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 16284956 - 16284906
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||| ||||||||| || ||| |||||||||||||||||||||    
T  16284956 tattttattttagtattcatctcacagacgtactctattctctcatctatt 16284906  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18556833 - 18556782
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    ||||||||||||||||| ||| | || ||||||| |||||||||||||||||    
T  18556833 ctattttattttattatccatatcacagacataccctattctctcatctatt 18556782  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 12229091 - 12229129
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctat 39  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  12229091 ctattttattttattattcatcttacatacatactctat 12229129  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 15872774 - 15872724
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    ||||||||| ||||||||||||||| |||||||||||| |  |||||||||    
T  15872774 tattttattatattattcatcttaccgacatactctatcccttcatctatt 15872724  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 15890366 - 15890316
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    ||||||||| ||||||||||||||| |||||||||||| |  |||||||||    
T  15890366 tattttattatattattcatcttaccgacatactctatcccttcatctatt 15890316  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 32252015 - 32251916
Alignment:
Q  50 atttttagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    |||||||||||||||||||||||| |||| ||||||||||||| |  ||||||||||||||||||||  ||||||||||| ||| | |||||||||||||    
T  32252015 atttttagtctcaagatgttttctaattcattatcattacatataatgtctcctctctatataactagattcttcctcactattatcattaactctttca 32251916  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 44586278 - 44586183
Alignment:
Q  54 ttagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    |||| |||||||||||||||||||| ||| ||||||||||| | |  |||| ||| ||||||| |||||||||||||||||  |||||||||||||    
T  44586278 ttaggctcaagatgttttcttattcattaacattacatacaacttaccctccctacataactaggttcttcctcaccattgccattaactctttca 44586183  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 23656277 - 23656183
Alignment:
Q  55 tagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    ||||||||| |||||||||||||| ||||||||||||||| | |  |||| ||||||||||| ||||||||||||| |||  ||||| |||||||    
T  23656277 tagtctcaatatgttttcttattcattatcattacatacaacttaccctccctatataactaggttcttcctcaccgttgccattaagtctttca 23656183  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 24786353 - 24786403
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||||||||| || ||| | |||||||||||||||||||    
T  24786353 tattttattttattattcatctcacagacgtgctctattctctcatctatt 24786403  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 16767907 - 16767980
Alignment:
Q  287 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcacatgtcc 360  Q
    |||| ||||||||||||||||||||||||||| | |||||| |   ||||| |||| ||||| |||||||||||    
T  16767907 acacctgcccatgtggatggcagttttgtaatttcgttaaataggcaggggcaaaattgagacttcacatgtcc 16767980  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44586380 - 44586336
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctc 45  Q
    ||||||||||| ||||||||| ||| ||| |||||||||||||||    
T  44586380 ctattttatttcattattcattttatggaaatactctattctctc 44586336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 34279637 - 34279567
Alignment:
Q  287 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcacatg 357  Q
    |||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  34279637 acacatgcccatgtggatggcaattttgtagtattgttaaaaagttaagggtaaaaatgagatttcacatg 34279567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 16642595 - 16642686
Alignment:
Q  57 gtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||| |||||||||||||  ||||||||||| ||  |||||| ||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  16642595 gtctcaagttgttttcttattcgctatcattacatgcaaagtctccgctctatatatctaggtttttcctcacaattgttattaactctttc 16642686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 14481444 - 14481350
Alignment:
Q  55 tagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    |||||||||||||||||| ||||| ||||||||||||||| | || |||| ||| ||||||| ||||| |||| ||||| | |||||||||||||    
T  14481444 tagtctcaagatgttttcctattcattatcattacatacaacttcccctccctacataactaggttctccctctccattttcattaactctttca 14481350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 16359404 - 16359310
Alignment:
Q  54 ttagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    ||||||||||||||| |||| |||| ||||||||||||| |  |||||||||||||  ||||| |||||||| |||||| || ||||||||||||    
T  16359404 ttagtctcaagatgtattctaattcgttatcattacatataatgtctcctctctatccaactaggttcttccccaccatcgtcattaactctttc 16359310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5943865 - 5943814
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  5943865 ctattttattttattattcatcttatggacatactctattttctcatctatt 5943814  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 14054869 - 14054778
Alignment:
Q  57 gtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||| |||||||||||||  || |||||||||||  || || |||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  14054869 gtctcaagttgttttcttattcgctaccattacatacaaagtatcatctctatatacctaggtttttcctcacaattgttattaactctttc 14054778  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 14062598 - 14062507
Alignment:
Q  57 gtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||| | |||||||||||  ||||||||||||||  ||||||||||||| || ||| ||| |||||||| ||||||||||| ||||||    
T  14062598 gtctcaagtttttttcttattcgctatcattacatacaaagtctcctctctatctacctaggtttttcctcacaattgttattaattctttc 14062507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 14481546 - 14481496
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||    
T  14481546 tattttattttattattcatctcacagacatactctattctctcatctatt 14481496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 13926663 - 13926595
Alignment:
Q  54 ttagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttct 122  Q
    ||||||||||||||| ||||||||| ||||||||||||| | ||||||||||||||  ||||| |||||    
T  13926663 ttagtctcaagatgtattcttattcattatcattacatataacgtctcctctctatgcaactaggttct 13926595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 7237836 - 7237770
Alignment:
Q  287 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttca 353  Q
    |||| |||||||||||||||||| |||||||| ||||||||||   |||||||||| ||||||||||    
T  7237836 acacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattgagatttca 7237770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 4712617 - 4712526
Alignment:
Q  57 gtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||| |||||||||||||  ||||||||||| ||   ||| |  |||||||| ||| ||| |||||||| ||||||||||||||||||    
T  4712617 gtctcaagttgttttcttattcgctatcattacatgcaaaatcttcgttctatatatctaggtttttcctcacaattgttattaactctttc 4712526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13926768 - 13926725
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctct 44  Q
    |||||||||||||||| |||||||| ||||||||||||||||||    
T  13926768 ctattttattttattaatcatcttatggacatactctattctct 13926725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 17791186 - 17791275
Alignment:
Q  55 tagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    |||| ||||||||||||||| ||| ||||||||||||| |||    || | | | ||||||| |||||||||||||||||| |||||||||||||    
T  17791186 tagtgtcaagatgttttcttcttcattatcattacata-atc----cccccccacataactaggttcttcctcaccattgtcattaactctttca 17791275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 19099626 - 19099715
Alignment:
Q  55 tagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    |||| ||||||||||||||| ||| ||||||||||||| |||    || | | | ||||||| |||||||||||||||||| |||||||||||||    
T  19099626 tagtgtcaagatgttttcttcttcattatcattacata-atc----cccccccacataactaggttcttcctcaccattgtcattaactctttca 19099715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 37508321 - 37508248
Alignment:
Q  287 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcacatgtcc 360  Q
    |||| ||||||||||||||||||||||||||| | ||| || |   ||||| |||| |||||||||||||||||    
T  37508321 acacctgcccatgtggatggcagttttgtaatttcgttgaacatgcaggggcaaaattgagatttcacatgtcc 37508248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 5943729 - 5943685
Alignment:
Q  106 ctatataactaagttcttcctcaccattgttattaactctttcaa 150  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||    
T  5943729 ctatataacttggttcttcctcaccattgtcattaactctttcaa 5943685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27870430 - 27870379
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||||  |||| || ||||||||||||| |||||||||||    
T  27870430 ctattttattttattatctatctcacagacatactctattttctcatctatt 27870379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 4712719 - 4712669
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||||| | ||||| ||||||  ||||||||||||||||    
T  4712719 tattttattttattattccttttacgaacatacaatattctctcatctatt 4712669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 16642493 - 16642543
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||| ||||||| ||||| ||||||  ||||||||||||||||    
T  16642493 tattttattttagtattcattttacgaacatacattattctctcatctatt 16642543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21975394 - 21975447
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatttt 54  Q
    ||||||||||||||||||||| |||  |||||||||||| |  |||||||||||    
T  21975394 ctattttattttattattcattttatagacatactctatcccatcatctatttt 21975447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21997825 - 21997878
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatttt 54  Q
    ||||||||||||||||||||| |||  |||||||||||| |  |||||||||||    
T  21997825 ctattttattttattattcattttatagacatactctatcccatcatctatttt 21997878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 51940774 - 51940818
Alignment:
Q  286 cacacatgcccatgtggatggcagttttgtaatattgttaaaaaa 330  Q
    ||||| ||||||||||||||||||||||||||  |||| ||||||    
T  51940774 cacacttgcccatgtggatggcagttttgtaaatttgtcaaaaaa 51940818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 8726231 - 8726164
Alignment:
Q  287 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcac 354  Q
    |||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||||||||    
T  8726231 acacatgcccatgtggatggcaattttgtagtattgttaaaaagttaagggtaaaaatgagatttcac 8726164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 31698289 - 31698356
Alignment:
Q  287 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcac 354  Q
    |||||||||||||||||||||| ||||||| | |||||||||| ||| ||||||||||||||||||||    
T  31698289 acacatgcccatgtggatggcaattttgtagtgttgttaaaaagttaagggtaaaaatgagatttcac 31698356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 13936008 - 13936102
Alignment:
Q  54 ttagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||| |||||  ||| ||||| ||||||||||||| | |||||||| |||||| ||||| |||||||| |||||| || ||||||||||||    
T  13936008 ttagtctcgagatgaattcgtattcattatcattacatataacgtctcctttctatacaactaggttcttccccaccatcgtcattaactctttc 13936102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 42838134 - 42838201
Alignment:
Q  287 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcac 354  Q
    |||| |||||||||||||||||| |||||||| ||||||||||   |||||||||| |||||||||||    
T  42838134 acacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattgagatttcac 42838201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 24831946 - 24831896
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||    
T  24831946 tattttattttattattcatctcacagacatactctattctctcttctatt 24831896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23960843 - 23960791
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctattt 53  Q
    ||||||| |||||| |||||||||||||||||||||||||| |||||| ||||    
T  23960843 ctattttgttttatcattcatcttacggacatactctattccctcatcaattt 23960791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 17458275 - 17458326
Alignment:
Q  96 cgtctcctctctatataactaagttcttcctcaccattgttattaactcttt 147  Q
    ||||||||||||||| ||||| ||||| ||||||||| || |||||||||||    
T  17458275 cgtctcctctctatacaactaggttctccctcaccatcgtcattaactcttt 17458326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24615621 - 24615672
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||| |||| ||| ||||||| | ||||||||||||||||    
T  24615621 ctattttattttattaatcatattaaggacatattttattctctcatctatt 24615672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24712019 - 24712070
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||| |||| ||| ||||||| | ||||||||||||||||    
T  24712019 ctattttattttattaatcatattaaggacatattttattctctcatctatt 24712070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24745015 - 24745066
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||| |||| ||| ||||||| | ||||||||||||||||    
T  24745015 ctattttattttattaatcatattaaggacatattttattctctcatctatt 24745066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24757781 - 24757832
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||| |||| ||| ||||||| | ||||||||||||||||    
T  24757781 ctattttattttattaatcatattaaggacatattttattctctcatctatt 24757832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 24831844 - 24831749
Alignment:
Q  55 tagtctcaagatgtttt-cttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    |||||||||||| |||| | ||||| ||||||||||||||| | || |||| ||| ||||||| |||||  ||| ||||| | |||||||||||||    
T  24831844 tagtctcaagatatttttcctattcattatcattacatacaacttcccctccctacataactaggttctctctctccattttcattaactctttca 24831749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13935906 - 13935951
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctca 46  Q
    |||||||||||||||| |||  ||||||||||||| ||||||||||    
T  13935906 ctattttattttattaatcactttacggacatactttattctctca 13935951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 29294160 - 29294254
Alignment:
Q  55 tagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    |||||||||||||||||||||||| ||||||||||||||| | |  |||| ||| ||||||| ||||| ||||||||| || |||||||||||||    
T  29294160 tagtctcaagatgttttcttattcattatcattacatacaactttccctccctacataactaggttctccctcaccatagtcattaactctttca 29294254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 23658833 - 23658923
Alignment:
Q  58 tctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    ||||||| | |||||||||||  ||||||||||| ||  |||||| ||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  23658833 tctcaagttcttttcttattcactatcattacatgcaaagtctccgctctatatatctaggtttttcctcacaattgttattaactctttc 23658923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 29294058 - 29294108
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||||||| ||| || ||||||||||| |||||||||||    
T  29294058 tattttattttattattcattttatgggcatactctattttctcatctatt 29294108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 23658730 - 23658780
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||| ||||||| ||||| ||||||  ||||||||||||||||    
T  23658730 tattttattttactattcattttacgaacatacattattctctcatctatt 23658780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 15867095 - 15867004
Alignment:
Q  57 gtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||| |||||| ||||||  |||||||| |||||  |||||||||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  15867095 gtctcaagttgtttttttattcgctatcattatatacaaagtctcctctctatatacctaggtttttcctcacaattgttattaactctttc 15867004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 16060810 - 16060902
Alignment:
Q  57 gtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaag-ttcttcctcaccattgttattaactctttc 148  Q
    |||||||| |||||||||||||  ||||||||||| ||  |||||| ||||||||| ||| | || |||||||||||||||||||||||||||    
T  16060810 gtctcaagttgttttcttattcgctatcattacatgcaaagtctccgctctatatatctaggttttttcctcaccattgttattaactctttc 16060902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37945743 - 37945692
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  37945743 ctattttaatttattattcatcttacggacatactctgttctcgcatctatt 37945692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 24768355 - 24768422
Alignment:
Q  287 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcac 354  Q
    |||| |||||||||||||||||| |||||||| ||||||||||   || ||||||| |||||||||||    
T  24768355 acacctgcccatgtggatggcagctttgtaattttgttaaaaaggaagaggtaaaattgagatttcac 24768422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 37945641 - 37945547
Alignment:
Q  54 ttagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    ||||||||| |||||| |||||||| || |||| || || | ||||||||| ||||| ||||| |||||||||||||||  | |||||||||||||    
T  37945641 ttagtctcacgatgttctcttattcgttttcat-acgtataacgtctcctccctatacaactaggttcttcctcaccatcatcattaactctttca 37945547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 4531574 - 4531496
Alignment:
Q  55 tagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccatt 133  Q
    ||||||||||||  ||| |||||| ||||||||||||||| | ||  ||| ||| || |||||||||||||||||||||    
T  4531574 tagtctcaagataatttgttattcattatcattacatacaacttccactccctacatgactaagttcttcctcaccatt 4531496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 20026179 - 20026229
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||| |||||||||||||||||||| ||| |||| ||||||||||||||||    
T  20026179 tattctattttattattcatcttacagacgtactatattctctcatctatt 20026229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 36963026 - 36962953
Alignment:
Q  287 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcacatgtcc 360  Q
    |||| |||||||||||||| |||||||||||| | |||||| |   ||||| |||| |||||||||||||||||    
T  36963026 acacctgcccatgtggatgacagttttgtaatttcgttaaacaggcaggggcaaaattgagatttcacatgtcc 36962953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 16060708 - 16060758
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||| ||||||| ||||| ||||||  ||||||||||||||||    
T  16060708 tattttattttagtattcattttacgaacatacattattctctcatctatt 16060758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 48376983 - 48377033
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||| ||||||| ||||| ||||||  ||||||||||||||||    
T  48376983 tattttattttagtattcattttacgaacatacattattctctcatctatt 48377033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 13882074 - 13881983
Alignment:
Q  57 gtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||| |||||||||||||  ||||||||||| ||  |||||| ||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  13882074 gtctcaagttgttttcttattcgctatcattacatgcaaagtctccgctctatatatctaggtttttcctcacaattgttattaactctttc 13881983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 51626800 - 51626720
Alignment:
Q  68 ttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||||||  ||||||||||||||  |||||||||||||||| ||| ||| |||||||| ||| |||| |||||||||    
T  51626800 ttttcttattcgctatcattacatacaaagtctcctctctatatacctaggtttttcctcacaattcttatcaactctttc 51626720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 1566984 - 1566937
Alignment:
Q  5 tttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  1566984 tttattttattattcattttacggacatactttattctctcttctatt 1566937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 15541993 - 15542055
Alignment:
Q  54 ttagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataacta 116  Q
    |||||||||||||||| |||||||| || | |||||||| | | |||||||||||||||||||    
T  15541993 ttagtctcaagatgttatcttattcatttttattacatataacatctcctctctatataacta 15542055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 1566886 - 1566836
Alignment:
Q  54 ttagtctcaagatgttttcttattctttatcattacatacatcgtctcctc 104  Q
    |||||||||||||| |||||||||| ||| ||||||||||| |||| ||||    
T  1566886 ttagtctcaagatgctttcttattcattaccattacatacaacgtcccctc 1566836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 13882176 - 13882126
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||| ||||||| ||||| ||||||  ||||||||||||||||    
T  13882176 tattttattttagtattcattttacgaacatacattattctctcatctatt 13882126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 3487 - 3393
Alignment:
Q  55 tagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    |||| |||||||||||||| |||| ||||||||||||||| | || |||| ||| ||||||| ||||||||||||||||   |||||||||||||    
T  3487 tagtgtcaagatgttttctcattcattatcattacatacaacttcccctccctacataactaggttcttcctcaccatttccattaactctttca 3393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 276 - 365
Alignment:
Q  57 gtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||| |||||||||||||  ||||||||||||||  |||||||||||||||| ||  ||| |||||||  ||||||||||||||||||    
T  276 gtctcaagttgttttcttattcgctatcattacatacaaagtctcctctctatataccttggtttttcctca--attgttattaactctttc 365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 174 - 224
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||| ||||||| ||||| ||||||  ||||||||||||||||    
T  174 tattttattttagtattcattttacgaacatacattattctctcatctatt 224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 13387 - 13296
Alignment:
Q  57 gtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||| |||||||||||||  ||||||||||| ||  |||||  ||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  13387 gtctcaagttgttttcttattcgctatcattacatgcaaagtctctgctctatatatctaggtttttcctcacaattgttattaactctttc 13296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 13489 - 13439
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||| ||||||| ||||| ||||||  ||||||||||||||||    
T  13489 tattttattttagtattcattttacgaacatacattattctctcatctatt 13439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 14675 - 14766
Alignment:
Q  57 gtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||| |||||||||||||  ||||||||||| ||  |||||| ||||||||| ||| ||| |||||||| ||||||||||||| ||||    
T  14675 gtctcaagttgttttcttattcgctatcattacatgcaaagtctccactctatatatctaggtttttcctcacaattgttattaactgtttc 14766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 131080 - 131171
Alignment:
Q  57 gtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||| |||||||||||||  ||||||||||| ||   ||||| ||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  131080 gtctcaagttgttttcttattcgctatcattacatgcaaactctccgctctatatatctaggtttttcctcacaattgttattaactctttc 131171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 130978 - 131028
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||| ||||||| ||||| ||||||  ||||||||||||||||    
T  130978 tattttattttagtattcattttacgaacatacattattctctcatctatt 131028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 12865 - 12958
Alignment:
Q  56 agtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttca 149  Q
    ||||||||||| ||||||||||| ||||| ||||||||| | |  |||| ||| ||||||| ||||| |||||||||||  |||||||||||||    
T  12865 agtctcaagatattttcttattcattatcgttacatacaactttccctccctacataactaggttctccctcaccattgccattaactctttca 12958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 12761 - 12811
Alignment:
Q  2 tattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||| ||||||||| || ||| |||||||||||||||||||||    
T  12761 tattttattttagtattcatctcacagacgtactctattctctcatctatt 12811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 29367 - 29447
Alignment:
Q  68 ttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    |||||||||||  ||||||||||| ||  |||||| ||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  29367 ttttcttattcgctatcattacatgcaaagtctccgctctatatatctaggtttttcctcacaattgttattaactctttc 29447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14024 - 13973
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||||  |||| || ||||||||||||| |||||||||||    
T  14024 ctattttattttattatctatctcacagacatactctattttctcatctatt 13973  T

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Target: scaffold0166 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 260 - 311
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    |||||||||||||||| |||| ||| ||||||| | ||||||||||||||||    
T  260 ctattttattttattaatcatattaaggacatattttattctctcatctatt 311  T

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Target: scaffold0094 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4620 - 4569
Alignment:
Q  1 ctattttattttattattcatcttacggacatactctattctctcatctatt 52  Q
    ||||||||||||||||| ||||| || ||||||  |||||||||||||||||    
T  4620 ctattttattttattatccatctcacagacatatcctattctctcatctatt 4569  T

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Target: scaffold0385 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 14515 - 14609
Alignment:
Q  54 ttagtctcaagatgttttcttattctttatcattacatacatcgtctcctctctatataactaagttcttcctcaccattgttattaactctttc 148  Q
    ||||||||||||||| || | |||| | ||||||||||| |  || ||| ||||| | | ||| |||||||| |||||| |||||||||||||||    
T  14515 ttagtctcaagatgtattgtaattcgtcatcattacatataatgtttcccctctagacacctaggttcttccccaccatcgttattaactctttc 14609  T

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