View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16398_low_7 (Length: 338)
Name: NF16398_low_7
Description: NF16398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16398_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 21706973 - 21706656
Alignment:
| Q |
1 |
aattttagtaacatttatctttcaaaattaaaataaaaatgtatttggattctttactaaaggtgcaaataaaagctcttttatgtcacctgaattgcat |
100 |
Q |
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| T |
21706973 |
aattttagtaacatttatctttcaaaattaaaataaaaatgtatttggattctttactgattgtgcaaataaaagctcttttatgtcacctgaattgcat |
21706874 |
T |
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| Q |
101 |
tcaaactttgagaaactttggggcattcatcaattttgagtcgtccaagtttcacagcctgtaacttataaccctggcagatatcaacaaaattcggcaa |
200 |
Q |
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| T |
21706873 |
tcaaactttgagaaactttggggcattcatcaatttcgagtcgtccaagtttcacagcctgtaacttataaccctggcagatatcaaaaaaattcggcaa |
21706774 |
T |
|
| Q |
201 |
acaatatagtgttatcgctgtcaagtttggaagaataacttccatttcatcaatagttctgtctccaccatcatgtttaaaaacctcttcaatttgatct |
300 |
Q |
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| T |
21706773 |
acaatatagtcttatctctgtcaagtttggaagaataacttccatttcatcaatagttctgtctccaccatcatgtttaaaaacctcttcaatttgatct |
21706674 |
T |
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| Q |
301 |
gagtttcctatttcaaga |
318 |
Q |
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| T |
21706673 |
gagtttcttatttcaaga |
21706656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 297
Target Start/End: Original strand, 21712523 - 21712787
Alignment:
| Q |
38 |
aatgtatttggattctttactaaaggtgcaaataaaagctcttttatgtcacctgaattgcattcaaactttgagaaactttggggcattcatcaatttt |
137 |
Q |
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| T |
21712523 |
aatgtatttagattctttactgaatgtgcaaataaaaactctttt-tgtcacctgaatttctttcacacttggagcaattttggggcattcatatatgtt |
21712621 |
T |
|
| Q |
138 |
gagtcgtccaagtttcacagcctgtaacttataaccctggcagatatcaacaaaattcggcaaacaatatagtgttatcgctgtcaagtttggaagaat- |
236 |
Q |
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|| | || |||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||| | | || |||||| ||||||||||||||||||| |
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| T |
21712622 |
gatttgttgaagtttcacagcctgtaacttacaaccctggcagatatgaacaaaactcggtaaaaagttgagcgttatctctgtcaagtttggaagaata |
21712721 |
T |
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| Q |
237 |
-----aacttccatttcatcaatagttctgtctccaccatcatgtttaaaaacctcttcaatttga |
297 |
Q |
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|||||||||||||| | ||||||||||||||| ||| | ||||||||||||||| |||| |
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| T |
21712722 |
agaacaacttccatttcatttacagttctgtctccaccgccatttctaaaaacctcttcaaattga |
21712787 |
T |
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