View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16399_high_10 (Length: 427)
Name: NF16399_high_10
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16399_high_10 |
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| [»] scaffold0257 (1 HSPs) |
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| [»] scaffold0922 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: scaffold0257 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 20325 - 19918
Alignment:
| Q |
13 |
aatatttactgtttttcaattttaccttgtgaactcattagtttcctctgttcgtttgagaaaaatccaaactggatagtgacaataacggtgtttctaa |
112 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20325 |
aatatttactgtttttcaattttaccttgtgaactcattagtttcctctgttcgtttgagaaaaatccaaactggatagtgacaataacggtgtttctaa |
20226 |
T |
|
| Q |
113 |
atagtatctgatcgaatcgaagcattctgacccaacnnnnnnngctaagagattactacaattaaatgcaaacaaaatgaaggcattgctttgctagact |
212 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20225 |
atagtatctgatcgaatcaaagcattctgacccaactttttttgctaagagattactacaattaaatgcaaacaaaatgaaggcattgctttgctagact |
20126 |
T |
|
| Q |
213 |
gcaattgtaaggttctggttgatatataaatgtatgttcgagcaataaataaaatattcaaggataaagaaaatcagggaacttctagaatgcaacgnnn |
312 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20125 |
gcaattgtaaggttttggttgatatataaatgtatgttcgagcaataaataaaatattcaaggataaagaaaatcagggaactgctagaatgcaacgaaa |
20026 |
T |
|
| Q |
313 |
nnnnntagtctaataaccaataggatcacttaaagcattccgagtttgtaaaatttttgcctcttgttgagtgatgctctgcaaaacagcttcagaggaa |
412 |
Q |
| |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20025 |
aaaaatagtttaataaccaataggatcacttaaagcaccccgagtttgtaaaatttgtgcctcttgttgagtgatgctctgcaaaacagcttcagaggaa |
19926 |
T |
|
| Q |
413 |
gccaattg |
420 |
Q |
| |
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|||||||| |
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| T |
19925 |
gccaattg |
19918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 244 - 420
Target Start/End: Complemental strand, 8021830 - 8021655
Alignment:
| Q |
244 |
gtatgttcgagcaataaataaaatattcaaggataaagaaaatcagggaacttctagaatgcaacgnnnnnnnntagtctaataaccaataggatcactt |
343 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||||||| |||||||| | |||||||||| |||||||||||| || |||||||||| |
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| T |
8021830 |
gtatgtccgagcaataaataaaatattgaaggataaagaaaagcagggaacaaattgaatgcaacgaaaaaaa-tagtctaataactaagaggatcactt |
8021732 |
T |
|
| Q |
344 |
aaagcattccgagtttgtaaaatttttgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaattg |
420 |
Q |
| |
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||||||| ||| ||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
8021731 |
aaagcatcccgtgttcgtaaaatttgtgcctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattg |
8021655 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 329 - 420
Target Start/End: Complemental strand, 28163558 - 28163467
Alignment:
| Q |
329 |
ccaataggatcacttaaagcattccgagtttgtaaaatttttgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaattg |
420 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28163558 |
ccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaattg |
28163467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 318 - 420
Target Start/End: Original strand, 17743718 - 17743820
Alignment:
| Q |
318 |
tagtctaataaccaataggatcacttaaagcattccgagtttgtaaaatttttgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaa |
417 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |||| |
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| T |
17743718 |
tagtctaatagccaataggatcacttaaagcagctcgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaatccaa |
17743817 |
T |
|
| Q |
418 |
ttg |
420 |
Q |
| |
|
||| |
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|
| T |
17743818 |
ttg |
17743820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 318 - 420
Target Start/End: Original strand, 19045038 - 19045140
Alignment:
| Q |
318 |
tagtctaataaccaataggatcacttaaagcattccgagtttgtaaaatttttgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaa |
417 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |||| |
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| T |
19045038 |
tagtctaatagccaataggatcacttaaagcagctcgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaatccaa |
19045137 |
T |
|
| Q |
418 |
ttg |
420 |
Q |
| |
|
||| |
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|
| T |
19045138 |
ttg |
19045140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 318 - 420
Target Start/End: Complemental strand, 28187579 - 28187477
Alignment:
| Q |
318 |
tagtctaataaccaataggatcacttaaagcattccgagtttgtaaaatttttgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaa |
417 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||| |||||||||| |||||| |||||||||||| ||||||||||||||||| |||||||||| |
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| T |
28187579 |
tagtctaatagccaataggatcacttaaagcagcccgagtatgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcacaggaagccaa |
28187480 |
T |
|
| Q |
418 |
ttg |
420 |
Q |
| |
|
||| |
|
|
| T |
28187479 |
ttg |
28187477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 329 - 419
Target Start/End: Complemental strand, 28060308 - 28060218
Alignment:
| Q |
329 |
ccaataggatcacttaaagcattccgagtttgtaaaatttttgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaatt |
419 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28060308 |
ccaataggatcacataaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaatt |
28060218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 329 - 419
Target Start/End: Complemental strand, 28070733 - 28070643
Alignment:
| Q |
329 |
ccaataggatcacttaaagcattccgagtttgtaaaatttttgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaatt |
419 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
28070733 |
ccaataggatcacataaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaatt |
28070643 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 318 - 420
Target Start/End: Complemental strand, 11422143 - 11422042
Alignment:
| Q |
318 |
tagtctaataaccaataggatcacttaaagcattccgagtttgtaaaatttttgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaa |
417 |
Q |
| |
|
|||| ||||| || |||||||||||||||||| |||||||| ||||| || |||||| || |||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
11422143 |
tagtttaatagccgataggatcacttaaagcag-ccgagtttctaaaaattgtgcctcctgctgagtgatgctctgtaaaacagcttcggaggaagccaa |
11422045 |
T |
|
| Q |
418 |
ttg |
420 |
Q |
| |
|
||| |
|
|
| T |
11422044 |
ttg |
11422042 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 26126307 - 26126355
Alignment:
| Q |
372 |
cctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaattg |
420 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||| |||||| |||||||| |
|
|
| T |
26126307 |
cctcttgttgattgatactctccaaaacagcttgagaggatgccaattg |
26126355 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 26176358 - 26176406
Alignment:
| Q |
372 |
cctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaattg |
420 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||| |||||| |||||||| |
|
|
| T |
26176358 |
cctcttgttgattgatactctccaaaacagcttgagaggatgccaattg |
26176406 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 28508237 - 28508285
Alignment:
| Q |
372 |
cctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaattg |
420 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||||||| | |||||| |
|
|
| T |
28508237 |
cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattg |
28508285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0922 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0922
Description:
Target: scaffold0922; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 318 - 420
Target Start/End: Complemental strand, 2658 - 2556
Alignment:
| Q |
318 |
tagtctaataaccaataggatcacttaaagcattccgagtttgtaaaatttttgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaa |
417 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | | |||| |||||| | |||||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
2658 |
tagtctaatagccaataggatcacttaaagcagcctgcgtttctaaaatctgtgcctcctgttgagtgatgttctgcaaaacagcttcaaaggaagccaa |
2559 |
T |
|
| Q |
418 |
ttg |
420 |
Q |
| |
|
||| |
|
|
| T |
2558 |
ttg |
2556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 49366 - 49414
Alignment:
| Q |
159 |
aagagattactacaattaaatgcaaacaaaatgaaggcattgctttgct |
207 |
Q |
| |
|
|||| |||| ||||||| |||||| ||||||||||||| |||||||||| |
|
|
| T |
49366 |
aagatattagtacaattcaatgcatacaaaatgaaggccttgctttgct |
49414 |
T |
|
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