View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16399_high_12 (Length: 360)
Name: NF16399_high_12
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16399_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 11046455 - 11046116
Alignment:
| Q |
17 |
attaaattctacgtacaactcaatcataaatattttaatatccaccccctcttcatcttcctttccttcattcttccgaattttttgttgatatttctga |
116 |
Q |
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| T |
11046455 |
attaaattctacgtacaactcaatcataaatattttaatatccaccccctcttcatcttcctttccttcattcttccgaattttttgttgatatttctga |
11046356 |
T |
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| Q |
117 |
aaatgatgtatctacgatgagtattaactattaatagttgaccccctctcactctctataataaattaaatacggttgctcgatcggacaatgcttctgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11046355 |
aaatgatgtatctacgatgagtattaactattaatagttgaccccctctcactctctataataaattaaatacggttgctcgatcggacaatgcttctgg |
11046256 |
T |
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| Q |
217 |
ccaaccgtaccttgagcccatgaacatgtaccatgcatagtactaacttctaattgagtttagctgtggtgaacagactcatgctctagtcatggcccca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11046255 |
ccaaccgtaccttgagcccatgaacatgtaccatgcatagtactaacttctaattgagcttagctgtggtgaacagactcatgctctagtcatggcccca |
11046156 |
T |
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| Q |
317 |
atgccaaaggaaaaccacatacatatatcctcctatgcta |
356 |
Q |
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|||||||||| |||||||| |||||||||||||||||||| |
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| T |
11046155 |
atgccaaagggaaaccacacacatatatcctcctatgcta |
11046116 |
T |
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