View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16399_high_13 (Length: 358)

Name: NF16399_high_13
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16399_high_13
NF16399_high_13
[»] chr1 (11 HSPs)
chr1 (13-342)||(13086549-13086878)
chr1 (146-342)||(12963341-12963537)
chr1 (160-342)||(13272175-13272357)
chr1 (120-275)||(19278665-19278817)
chr1 (169-273)||(13080385-13080489)
chr1 (146-342)||(13243975-13244171)
chr1 (165-218)||(30367668-30367721)
chr1 (165-243)||(13094975-13095053)
chr1 (165-243)||(13130404-13130482)
chr1 (165-243)||(13162097-13162175)
chr1 (166-231)||(13064766-13064831)
[»] chr6 (1 HSPs)
chr6 (165-218)||(31396239-31396292)


Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 13086549 - 13086878
Alignment:
Q  13 aatatacttatcaatttcaaccattgcctcatttcccaagccttccttcattagtgcctttagcaagtaaaaatggctttcatcaaaatcttcaccgttt 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13086549 aatatacttatcaatttcaaccatttcctcatttcccaagccttccttcatcagtgcctttagcaagtaaaaatggctttcatcaaaatcttcaccgttt 13086648  T
Q  113 cgcaatcttcttctctcttcatcacctttggaataataagttatacatttggacaagaattggtgaagattttcttgagctaccttgtacttcttctctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13086649 cgcaatcttcttctctcttcatcacctttggaataataagttatacatttggacaagaattggtgaagattttcttgagctaccttgtacttcttctctt 13086748  T
Q  213 gaccaatttgtagccatttttgtaacttccaaaagtattttggaatatagtgcctagacaatattgtatcctcaataatcgaaatagcttttacatgagc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13086749 gaccaatttgtagccatttttgtaacttccaaaagtattttggaatatagtgcctagacaatattgtatcctcaataatcgaaatagcttttacatgagc 13086848  T
Q  313 aatctctggtaattcattgaacttgtaagg 342  Q
    ||||||||||||||||||||||||||||||    
T  13086849 aatctctggtaattcattgaacttgtaagg 13086878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 146 - 342
Target Start/End: Complemental strand, 12963537 - 12963341
Alignment:
Q  146 taataagttatacatttggacaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttccaaa 245  Q
    ||||||| |||||| ||| |||||||||  |||| ||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  12963537 taataagatatacaattgtacaagaatttatgaatattttcttgagctatattgttcttcttctcttgaccaatttgtagccatttttgtagcttccaaa 12963438  T
Q  246 agtattttggaatatagtgcctagacaatattgtatcctcaataatcgaaatagcttttacatgagcaatctctggtaattcattgaacttgtaagg 342  Q
    |  |||||||||||||||||||| ||||||| ||||||||||| |  ||||||||||||||||  ||||| ||||  || |||||||||||||||||    
T  12963437 aacattttggaatatagtgcctaaacaatatcgtatcctcaatcacagaaatagcttttacatacgcaatatctgaaaactcattgaacttgtaagg 12963341  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 342
Target Start/End: Original strand, 13272175 - 13272357
Alignment:
Q  160 tttggacaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttccaaaagtattttggaata 259  Q
    |||| |||||||||| |||| ||||| ||||||||   ||| |||||||||||||||||| ||||||||||| |||| ||||||||   ||||||||| |    
T  13272175 tttgaacaagaattgatgaatatttttttgagctatactgttcttcttctcttgaccaatatgtagccatttctgtagcttccaaacacattttggaaca 13272274  T
Q  260 tagtgcctagacaatattgtatcctcaataatcgaaatagcttttacatgagcaatctctggtaattcattgaacttgtaagg 342  Q
     ||||||||  ||||| |||||||||||| |  |||||||||||||||| |||||| ||| | |  |||||||||||||||||    
T  13272275 gagtgcctatgcaataatgtatcctcaatcacagaaatagcttttacataagcaatttctcgaagctcattgaacttgtaagg 13272357  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 120 - 275
Target Start/End: Complemental strand, 19278817 - 19278665
Alignment:
Q  120 ttcttctctcttcatcacctttggaataataagttatacatttggacaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaat 219  Q
    ||||| |||||||||||||||||   ||||||| ||||||||||  |||||||| |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  19278817 ttcttttctcttcatcacctttg---taataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttcttctcttgaccaat 19278721  T
Q  220 ttgtagccatttttgtaacttccaaaagtattttggaatatagtgcctagacaata 275  Q
     |||||||| ||||| | ||||||||   ||||||| |||||||| ||| ||||||    
T  19278720 gtgtagccacttttgcagcttccaaatacattttggcatatagtgtctatacaata 19278665  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 13080489 - 13080385
Alignment:
Q  169 gaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttccaaaagtattttggaatatagtgccta 268  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||   |||||||||||||||||||     
T  13080489 gaattgatgaagattttcttttgctaccttgtacttcttctcttgaccaatctgtaaccatttttgtagcttccaaatacattttggaatatagtgcctc 13080390  T
Q  269 gacaa 273  Q
    |||||    
T  13080389 gacaa 13080385  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 342
Target Start/End: Complemental strand, 13244171 - 13243975
Alignment:
Q  146 taataagttatacatttggacaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttccaaa 245  Q
    |||| ||||||||||||   ||||||||||||||||||||||  |||| |||||  |||||||||| |||||||||||||||| ||||||| ||||||||    
T  13244171 taatcagttatacatttctccaagaattggtgaagattttctctagctgccttgcccttcttctctagaccaatttgtagccacttttgtagcttccaaa 13244072  T
Q  246 agtattttggaatatagtgcctagacaatattgtatcctcaa-taatcgaaatagcttttacatgagcaatctctggtaattcattgaacttgtaagg 342  Q
       |||| ||||||||||| |||  |||||   ||||||||| ||  | ||| ||||||| ||| |||||| |||| ||| |||||| ||||||||||    
T  13244071 tacatttcggaatatagtgtctacgcaataccatatcctcaagtacactaaa-agctttttcataagcaatatctgataactcattgcacttgtaagg 13243975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 30367721 - 30367668
Alignment:
Q  165 acaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaa 218  Q
    |||||||| ||| ||||||||||| |||||||||||||||||| ||||||||||    
T  30367721 acaagaatcggtcaagattttcttcagctaccttgtacttcttttcttgaccaa 30367668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 13094975 - 13095053
Alignment:
Q  165 acaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttcca 243  Q
    |||||||| ||| ||||| |||||| || |||||| ||||||||||||||||||  |  ||||||||||| ||||||||    
T  13094975 acaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttcca 13095053  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 13130404 - 13130482
Alignment:
Q  165 acaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttcca 243  Q
    |||||||| ||| ||||| |||||| || |||||| ||||||||||||||||||  |  ||||||||||| ||||||||    
T  13130404 acaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttcca 13130482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 13162097 - 13162175
Alignment:
Q  165 acaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttcca 243  Q
    |||||||| ||| ||||| |||||| || |||||| ||||||||||||||||||  |  ||||||||||| ||||||||    
T  13162097 acaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttcca 13162175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 13064831 - 13064766
Alignment:
Q  166 caagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccattt 231  Q
    |||||||| || |||| ||||||||||||| |||   |||||||||||||||||||| ||||||||    
T  13064831 caagaatttgtcaagactttcttgagctactttgagtttcttctcttgaccaatttggagccattt 13064766  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 31396292 - 31396239
Alignment:
Q  165 acaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaa 218  Q
    |||||||| ||| |||||||||||| ||||||| |||| |||| ||||||||||    
T  31396292 acaagaatcggttaagattttcttgggctacctcgtacctcttttcttgaccaa 31396239  T

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