View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16399_high_16 (Length: 295)
Name: NF16399_high_16
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16399_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 148 - 272
Target Start/End: Original strand, 48569141 - 48569265
Alignment:
| Q |
148 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48569141 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctttttggttggaaatgctccaatggcccatatggttgttc |
48569240 |
T |
|
| Q |
248 |
agcctaatgaagaccattcaggatc |
272 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48569241 |
agcctaatgaagaccattcaggatc |
48569265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 48569018 - 48569090
Alignment:
| Q |
17 |
aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48569018 |
aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg |
48569090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 10821937 - 10821831
Alignment:
| Q |
154 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta |
253 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| |||||||||| || ||||| |||||||| ||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
10821937 |
ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatacatattttgtcggaaatgctccgatggcccatacggttgttcagccta |
10821838 |
T |
|
| Q |
254 |
atgaaga |
260 |
Q |
| |
|
| ||||| |
|
|
| T |
10821837 |
aagaaga |
10821831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 36145449 - 36145555
Alignment:
| Q |
154 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta |
253 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| | |||||||| || ||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
36145449 |
ttgcagtgtgcagaatctgccttgaaatcagtcttgggagatctttcaaatacatattttgtcggaaatgctccgatggcccatattgttgttcagccta |
36145548 |
T |
|
| Q |
254 |
atgaaga |
260 |
Q |
| |
|
| ||||| |
|
|
| T |
36145549 |
aagaaga |
36145555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 10822265 - 10822202
Alignment:
| Q |
19 |
cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
82 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
10822265 |
cctgtgtggcattttccagaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc |
10822202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 36145131 - 36145194
Alignment:
| Q |
19 |
cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
82 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
36145131 |
cctgtgtggcattttccagaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc |
36145194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University