View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16399_high_17 (Length: 253)

Name: NF16399_high_17
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16399_high_17
NF16399_high_17
[»] scaffold0257 (1 HSPs)
scaffold0257 (1-236)||(19663-19898)
[»] chr3 (28 HSPs)
chr3 (1-236)||(28187222-28187457)
chr3 (1-236)||(28057748-28057983)
chr3 (1-236)||(28068173-28068408)
chr3 (1-236)||(17743840-17744075)
chr3 (1-236)||(19045160-19045395)
chr3 (1-236)||(28163212-28163447)
chr3 (34-236)||(8538478-8538680)
chr3 (1-236)||(11421787-11422022)
chr3 (33-236)||(28152215-28152418)
chr3 (34-236)||(27920770-27920972)
chr3 (26-236)||(27954739-27954949)
chr3 (34-235)||(28038076-28038277)
chr3 (82-236)||(27430393-27430547)
chr3 (33-235)||(27777105-27777307)
chr3 (34-236)||(30993901-30994099)
chr3 (129-236)||(18078689-18078796)
chr3 (25-236)||(26203977-26204188)
chr3 (25-236)||(26109685-26109896)
chr3 (65-236)||(28508432-28508603)
chr3 (25-209)||(28136907-28137091)
chr3 (65-236)||(26138609-26138780)
chr3 (65-217)||(26232069-26232221)
chr3 (85-236)||(28479269-28479420)
chr3 (44-218)||(26126481-26126655)
chr3 (44-218)||(26176532-26176706)
chr3 (105-194)||(27458261-27458350)
chr3 (25-119)||(27356921-27357015)
chr3 (93-138)||(8549708-8549753)
[»] chr2 (4 HSPs)
chr2 (2-236)||(8021399-8021633)
chr2 (25-235)||(22400719-22400929)
chr2 (25-235)||(22965896-22966106)
chr2 (25-215)||(22792443-22792633)
[»] scaffold0922 (1 HSPs)
scaffold0922 (1-236)||(2301-2536)
[»] scaffold1147 (1 HSPs)
scaffold1147 (1-198)||(873-1070)
[»] chr7 (1 HSPs)
chr7 (93-236)||(8692444-8692587)


Alignment Details
Target: scaffold0257 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 19898 - 19663
Alignment:
1 tgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19898 tgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaacc 19799  T
101 atttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaa 200  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
19798 atttcttatcaaaaccacatttgcgcacatcttgtagtaactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaa 19699  T
201 tttcaatagatcagctaggcagttgtaggcataacc 236  Q
    ||||||||| ||||||||||| ||||||||||||||    
19698 tttcaatagctcagctaggcaattgtaggcataacc 19663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 28187457 - 28187222
Alignment:
1 tgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaacc 100  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| | |||||||||||    
28187457 tgttgtgtcaaaatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgtttttcaatatcatccaacc 28187358  T
101 atttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaa 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
28187357 attccttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaa 28187258  T
201 tttcaatagatcagctaggcagttgtaggcataacc 236  Q
    ||||||||| ||||||||||||||||||||||||||    
28187257 tttcaatagctcagctaggcagttgtaggcataacc 28187222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 28057983 - 28057748
Alignment:
1 tgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaacc 100  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||| | |||||||||||    
28057983 tgttgagtcaaaatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaaacgcgtttttcaatatcatccaacc 28057884  T
101 atttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaa 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
28057883 attccttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaa 28057784  T
201 tttcaatagatcagctaggcagttgtaggcataacc 236  Q
    ||||||||| ||||||||||| ||||||||||||||    
28057783 tttcaatagctcagctaggcaattgtaggcataacc 28057748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 28068408 - 28068173
Alignment:
1 tgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaacc 100  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||| | |||||||||||    
28068408 tgttgagtcaaaatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaaacgcgtttttcaatatcatccaacc 28068309  T
101 atttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaa 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
28068308 attccttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaa 28068209  T
201 tttcaatagatcagctaggcagttgtaggcataacc 236  Q
    ||||||||| ||||||||||| ||||||||||||||    
28068208 tttcaatagctcagctaggcaattgtaggcataacc 28068173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 17743840 - 17744075
Alignment:
1 tgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaacc 100  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
17743840 tgttgtgtcaaaatatgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaacc 17743939  T
101 atttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaa 200  Q
    ||||||||||||||  |||| |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| | ||||| |||||    
17743940 atttcttatcaaaaggaaatctgcgcacatcttgtaataactcgacaaattcagagttgcttgaacctaacacatccaacacactacgagtttgaaggaa 17744039  T
201 tttcaatagatcagctaggcagttgtaggcataacc 236  Q
    ||||||||| ||||||||||| ||||||||||||||    
17744040 tttcaatagctcagctaggcaattgtaggcataacc 17744075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 19045160 - 19045395
Alignment:
1 tgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaacc 100  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
19045160 tgttgtgtcaaaatatgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaacc 19045259  T
101 atttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaa 200  Q
    ||||||||||||||  |||| |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| | ||||| |||||    
19045260 atttcttatcaaaaggaaatctgcgcacatcttgtaataactcgacaaattcagagttgcttgaacctaacacatccaacacactacgagtttgaaggaa 19045359  T
201 tttcaatagatcagctaggcagttgtaggcataacc 236  Q
    ||||||||| ||||||||||| ||||||||||||||    
19045360 tttcaatagctcagctaggcaattgtaggcataacc 19045395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 28163447 - 28163212
Alignment:
1 tgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaacc 100  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||||    
28163447 tgttgagtcaaaatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgcttttcgatatcatccaacc 28163348  T
101 atttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaa 200  Q
    ||| ||||| |||   |||| ||||  ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
28163347 attccttatgaaatggaaatctgcgtgcatcttgtagtaactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaa 28163248  T
201 tttcaatagatcagctaggcagttgtaggcataacc 236  Q
    ||||||||| || ||||| || ||||||| ||||||    
28163247 tttcaatagctccgctagacaattgtaggtataacc 28163212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 8538478 - 8538680
Alignment:
34 ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatctt 133  Q
    ||||||||||||| |||||||| |||| || |||||||||||||||||||||| |||  ||||||||| | ||||||||||||| |||| ||||||||||    
8538478 ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacgatccaaccaatccttatcaaaaccacattttcgcacatctt 8538577  T
134 gtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcata 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||||    
8538578 gtaataactcaacaaattcagattggcttgaacctaacacatccaacacaatatgagtttggaggaatttcaatagctcagctagacagttgtaggcata 8538677  T
234 acc 236  Q
    |||    
8538678 acc 8538680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11422022 - 11421787
Alignment:
1 tgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaacc 100  Q
    ||||| ||||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
11422022 tgttgagtcaaaatgtattttgagttcaacaatttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaacc 11421923  T
101 atttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaa 200  Q
    |||  || ||||||  |||| | ||||||||||||| |||||||||||||  ||| |  |||||||||||||| || |||||||||||||| ||||||||    
11421922 attctttgtcaaaaggaaatctacgcacatcttgtattaactcaacaaatgtagagtttcttgaacctaacacgtctaacacactatgggtctggaggaa 11421823  T
201 tttcaatagatcagctaggcagttgtaggcataacc 236  Q
    ||||||||| ||||||||||| ||||||||||||||    
11421822 tttcaatagctcagctaggcaattgtaggcataacc 11421787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 28152418 - 28152215
Alignment:
33 tttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatct 132  Q
    |||||||||||||| |||||||| |||| || ||||||||||||||||| |||| |||||||||||||| | |||||||||   |||| | |||||||||    
28152418 tttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcatttcaacatcatccaaccactccttatcaaacggaaatctacgcacatct 28152319  T
133 tgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcat 232  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||| |||||||||||    
28152318 tgtaataactcaacaaattcagagttgcttgaacctaacacatccaacacactatgagtttgaaggaatttcaatagctctgctaggctgttgtaggcat 28152219  T
233 aacc 236  Q
    ||||    
28152218 aacc 28152215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 27920972 - 27920770
Alignment:
34 ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatctt 133  Q
    ||||||||||||| || ||||| |||| |  || || |||||||||||||||| ||| |||||||||| |  |||||||||||| || ||||||||||||    
27920972 ttttgcaatgcattttcagagaattgtaattcatgagacaaagcgcgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcgcacatctt 27920873  T
134 gtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcata 233  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||  |||||| ||||||||||||||||||| |||    
27920872 gtaataaatcaacaaattcagagtggcttgaacctaacacatccaacgcactatgagtttggaggaatcgcaatagctcagctaggcagttgtaggaata 27920773  T
234 acc 236  Q
    |||    
27920772 acc 27920770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 27954949 - 27954739
Alignment:
26 ccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcg 125  Q
    |||||| |||||||||||||| |||||||| |||| |  ||  | |||||||| ||||||| ||| |||||||||| |  |||||||||||| || ||||    
27954949 ccaacagtttttgcaatgcattttgagagaattgtaattcataagacaaagcgtgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcg 27954850  T
126 cacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttg 225  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||  |||||| |||||||||||||||    
27954849 cacatcttgtaataaatcaacaaattcagagtggcttgaacctaacacatccaacgcactatgagtttggaggaatcgcaatagctcagctaggcagttg 27954750  T
226 taggcataacc 236  Q
    |||| ||||||    
27954749 taggaataacc 27954739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 28038277 - 28038076
Alignment:
34 ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatctt 133  Q
    ||||||||||||| |||||||| || | || ||||||||||||| |||||||| ||| |||| ||||| |  ||||| |||| | || ||||||||||||    
28038277 ttttgcaatgcattttgagagaattttaaatcaggaaacaaagcacgcttttcgacaccatcaaaccaatctttatcgaaactacatctgcgcacatctt 28038178  T
134 gtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcata 233  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||| |||||    
28038177 gtaacaactcaacaaattcagtgtggcttgaacctaacacatccaacacactatgcgtttggaggaatttcaatagatcgactaggcagttgtaagcata 28038078  T
234 ac 235  Q
    ||    
28038077 ac 28038076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 27430393 - 27430547
Alignment:
82 ttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaaca 181  Q
    ||||| ||| |||||||||||| ||||||||||  |||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
27430393 ttttcaacaccatccaaccattccttatcaaaaggaaatctacgcacatcttgtaataactcaacaaattcagagtggcttgaacctaccacatccaaca 27430492  T
182 cactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcataacc 236  Q
    || |||| | |||||||||||||||||| ||||||||||||||||||||||||||    
27430493 cattatgtggttggaggaatttcaatagctcagctaggcagttgtaggcataacc 27430547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 27777307 - 27777105
Alignment:
33 tttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatct 132  Q
    |||||| |||||| ||||||||| ||||  | ||| ||||||||| || ||||| ||| |||||||||| |  |||||||||||| || |||| ||||||    
27777307 tttttgtaatgcaacttgagagaattgtatatcagaaaacaaagcacgtttttcaacaccatccaaccaatctttatcaaaaccacatctgcgtacatct 27777208  T
133 tgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcat 232  Q
    |||||||||||| |||| |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||||| ||    
27777207 tgtaataactcatcaaactcagagcggcttgaacctaacacatccaacacactatggttttggaggaatttcaatagctcagcaagacagttgtaggaat 27777108  T
233 aac 235  Q
    |||    
27777107 aac 27777105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 30994099 - 30993901
Alignment:
34 ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatctt 133  Q
    ||||||||||||| |||||||| |||| || ||||||| ||||| |||||||| |||   |||||||| |    ||  |||||| |||| | ||| ||||    
30994099 ttttgcaatgcattttgagagaattgtaaatcaggaaataaagcacgcttttcgacactgtccaaccaat----attgaaaccacatttccacacttctt 30994004  T
134 gtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcata 233  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||    
30994003 ctaataactcaacaaattcagagtggcttgaacctaacacatccaacacacaatgcgtttggaggaatttcaatagatcagctagacagttgtaggcata 30993904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 18078689 - 18078796
Alignment:
129 atcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtag 228  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||    
18078689 atcttgtaataactcaacaaattcagaatggcttgaacctaacacatccaacacattatgcgtttggaggaatttcaatagctcagctaggcaattgtag 18078788  T
229 gcataacc 236  Q
    ||||||||    
18078789 gcataacc 18078796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 26203977 - 26204188
Alignment:
25 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgc 124  Q
    ||||| ||||| ||||| |||||||| || ||||||  | |||| |||||||| ||| |||| ||| |||||||||| | |||||||||||||||  ||     
26203977 tccaataatttctgcaaggcatcttgtgatacttgtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgt 26204076  T
125 gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagtt 224  Q
    || |||||||||||||||| | ||||||||| |||  ||| ||||| || ||||| ||| ||||||||| ||||||||||||||| ||||||||  | ||    
26204077 gcgcatcttgtaataactccagaaattcagagtggaatgagcctaatacttccaatacattatgggttttgaggaatttcaatagttcagctagtaaatt 26204176  T
225 gtaggcataacc 236  Q
    ||||||| ||||    
26204177 gtaggcacaacc 26204188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 26109685 - 26109896
Alignment:
25 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgc 124  Q
    ||||| ||||| ||||| |||||||| || ||||||  | |||| |||||||| ||| |||| ||| |||||||||| | |||||||||||||||  ||     
26109685 tccaataatttctgcaaggcatcttgtgatacttgtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgt 26109784  T
125 gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagtt 224  Q
    || |||||||||||||||| | ||||||||| |||  ||| |||||  | ||||| | | ||||||||| ||||||||||||||| ||||||||  | ||    
26109785 gcgcatcttgtaataactccataaattcagagtggtatgatcctaattcttccaatatattatgggttttgaggaatttcaatagttcagctagtaaatt 26109884  T
225 gtaggcataacc 236  Q
    ||||||| ||||    
26109885 gtaggcacaacc 26109896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 28508432 - 28508603
Alignment:
65 caggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttga 164  Q
    ||||||||||||||||| | || ||| |||||||||| | |||||||||||||||  ||||| ||||||||| |||||| ||||||| ||| ||||  ||    
28508432 caggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacga 28508531  T
165 acctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcataacc 236  Q
     || || || ||||||| |||||||||||  |||||||||||||| ||||||||  | ||||||||| ||||    
28508532 ccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacc 28508603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 28137091 - 28136907
Alignment:
25 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgc 124  Q
    ||||| ||||||||||  || |||||||| | ||||  | ||||||||| ||| ||| |||| |||  ||||||||| | ||||||||||||||| ||||    
28137091 tccaataatttttgcatggcgtcttgagatatttgtatatcaggaaacatagcccgcctttcgacactatccaaccaatccttatcaaaaccaaagttgc 28136992  T
125 gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatag 209  Q
    || ||||| ||| ||  || ||||||||||| |||| ||| ||||| |||||||| |||||||| ||||  ||||||||||||||    
28136991 gcgcatctagtagtagatccacaaattcagagtggcatgagcctaatacatccaagacactatgagtttcaaggaatttcaatag 28136907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 26138609 - 26138780
Alignment:
65 caggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttga 164  Q
    ||||||||||||| ||| |||| ||| |||||||||| | |||||||||||||||  | ||  |||||||||||||||| ||||||||||| |||  ||     
26138609 caggaaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagcttcgtgcatcttgtaataactccacaaattcagagtggaatgt 26138708  T
165 acctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcataacc 236  Q
     || || || ||||| | ||||||||||| ||||||||||||||| | ||||||   |||||||||| ||||    
26138709 gcccaatacttccaatatactatgggttttgaggaatttcaatagtttagctagtacgttgtaggcacaacc 26138780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 217
Target Start/End: Original strand, 26232069 - 26232221
Alignment:
65 caggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttga 164  Q
    ||||| |||||| |||| |||| ||| |||||||||| | |||||||||||||||  | ||  ||||||||||||||||  |||||||||| |||  |||    
26232069 caggacacaaagtgcgcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactcctcaaattcagagtggaatga 26232168  T
165 acctaacacatccaacacactatgggtttggaggaatttcaatagatcagcta 217  Q
     || || || |||||||||||||| |||| ||||||||||| ||| |||||||    
26232169 gcccaatacttccaacacactatgagttttgaggaatttcagtagttcagcta 26232221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 236
Target Start/End: Original strand, 28479269 - 28479420
Alignment:
85 tccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacac 184  Q
    |||||| |||||||||| | |||||| ||||||||  ||||| |||||||||||||||| ||||||| ||| ||||  |  || || || ||||||||||    
28479269 tccacaccatccaaccaatccttatctaaaccaaagctgcgcgcatcttgtaataactccacaaatttagagtggcacggccccaatacttccaacacac 28479368  T
185 tatgggtttggaggaatttcaatagatcagctaggcagttgtaggcataacc 236  Q
    |||||||||  |||||||||||||| || |||||  | ||||||||| ||||    
28479369 tatgggtttcaaggaatttcaatagttcggctagtaaattgtaggcacaacc 28479420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 26126481 - 26126655
Alignment:
44 catcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactc 143  Q
    ||||||||||||||||   | ||||| |||||| || | |||| ||| |||||||||| | |||||||||||||||  | ||  ||||||||||||||||    
26126481 catcttgagagacttgcatatcaggacacaaagtgctcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactc 26126580  T
144 aacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctag 218  Q
      |||||||||| |||  ||| || || || ||||||||||| ||||||| ||| |||||||| || ||||||||    
26126581 ctcaaattcagagtggaatgaccccaatacttccaacacactgtgggttttgagaaatttcaacagttcagctag 26126655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 26176532 - 26176706
Alignment:
44 catcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactc 143  Q
    |||||||||| |||||   | ||||| |||||| || | |||| ||| |||||||||| | |||||||||||||||  | ||  ||||||||||||||||    
26176532 catcttgagaaacttgcatatcaggacacaaagtgctcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactc 26176631  T
144 aacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctag 218  Q
      |||||||||| |||  ||| || || || ||||||||||| ||||||| |||||||||||| || ||||||||    
26176632 ctcaaattcagagtggaatgagcccaatacttccaacacactgtgggttttgaggaatttcaacagttcagctag 26176706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 27458261 - 27458350
Alignment:
105 cttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttg 194  Q
    |||||||||| ||||  |||| |||||||||||||||| |||||||| |||  |||||||||| |||||||| |||||||||||||||||    
27458261 cttatcaaaagcaaagctgcgtacatcttgtaataacttaacaaatttagagcggcttgaacccaacacatcaaacacactatgggtttg 27458350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 27357015 - 27356921
Alignment:
25 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaa 119  Q
    ||||||| |||||||||||||||||||||||||| |  | | | ||||||||| ||  |||| |||  ||||||||| | |||||||||||||||    
27357015 tccaacagtttttgcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaa 27356921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 8549753 - 8549708
Alignment:
93 atccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaat 138  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||||    
8549753 atccaaccaatccttatcaaaaccacatttgcgcacatcttgtaat 8549708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 8021633 - 8021399
Alignment:
2 gttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaacca 101  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| | ||||||||||||    
8021633 gttgtgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcacgcttttcgatatcatccaacca 8021534  T
102 tttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaat 201  Q
    || ||||||||||  |||  || | ||||||||||||||||| | |||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||    
8021533 ttccttatcaaaaggaaaactgtgtacatcttgtaataactcgataaattcagagaggcttgaacctaacacatccaacacactatgagtttgaaggaat 8021434  T
202 ttcaatagatcagctaggcagttgtaggcataacc 236  Q
    |||||||| || ||||| |||||||||||||||||    
8021433 ttcaatagctcggctagacagttgtaggcataacc 8021399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 22400929 - 22400719
Alignment:
25 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgc 124  Q
    ||||||| |||||||||||||||||||||||||| |  | | | ||||||||| ||  |||| |||  ||||||||| | |||||||||||||||  |||    
22400929 tccaacagtttttgcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgc 22400830  T
125 gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagtt 224  Q
    ||| ||  |||| || || ||| |||||||| || ||||||||||||||||| | |||||||||||||||||||||||  |||||||||||||| ||  |    
22400829 gcaaattgtgtagtagcttaacgaattcagagtgacttgaacctaacacatctagcacactatgggtttggaggaattgtaatagatcagctagacaagt 22400730  T
225 gtaggcataac 235  Q
    ||| |||||||    
22400729 gtatgcataac 22400719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 22966106 - 22965896
Alignment:
25 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgc 124  Q
    ||||||| |||||||||||||||||||||||||| |  | | | ||||||||| ||  |||| |||  ||||||||| | |||||||||||||||  |||    
22966106 tccaacagtttttgcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgc 22966007  T
125 gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagtt 224  Q
    ||| ||  |||| || || ||| |||||||| || |||||| |||||||||| | |||||||||||||||||||||||  ||||| |||||||| ||  |    
22966006 gcaaattgtgtagtagcttaacgaattcagaatgacttgaagctaacacatctagcacactatgggtttggaggaattgtaatagctcagctagacaagt 22965907  T
225 gtaggcataac 235  Q
    ||| |||||||    
22965906 gtatgcataac 22965896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 22792633 - 22792443
Alignment:
25 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgc 124  Q
    ||||||| |||||||||||||||||||||||||| |  | | | ||||||||| ||  |||| |||  ||||||||| | |||||||||||||||  | |    
22792633 tccaacagtttttgcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctac 22792534  T
125 gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagc 215  Q
    ||| ||  |||| || || ||  |||||||| || ||||||||||||||||||| |||||||||||||||||||||||  ||||| |||||    
22792533 gcaaattgtgtagtagcttaatgaattcagagtgacttgaacctaacacatccagcacactatgggtttggaggaattgtaatagctcagc 22792443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 2536 - 2301
Alignment:
1 tgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaacc 100  Q
    ||||| ||||| ||||||||||||||||| || |||||||  |||| ||||||||||||| ||||||||||||| ||| ||||||| ||| |||||||||    
2536 tgttgagtcaaaatgtgttttgagtccaaaaaattttgcagcgcattttgagagacttgtaaaccaggaaacaaggcgagcttttcaacaccatccaacc 2437  T
101 atttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaa 200  Q
    |||  |||||||||  |||| | |||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||    |||  ||||||||||    
2436 attctttatcaaaaggaaatctacgcatatcttgtaatagctcaacaaattcagaatggcttgaacctaacacatccaacaggtaatgcttttggaggaa 2337  T
201 tttcaatagatcagctaggcagttgtaggcataacc 236  Q
    ||||||||| |||||||| |||||||||||||||||    
2336 tttcaatagctcagctagacagttgtaggcataacc 2301  T

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Target: scaffold1147 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold1147
Description:

Target: scaffold1147; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 1070 - 873
Alignment:
1 tgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaacc 100  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||| | | ||||| ||| |||| ||||    
1070 tgttgagtcaaaatgtgttttaagtccaacaatttttgcaatgtatctagagagacttgtaaactaggaaacaaagtgtgtttttcgacaccatctaacc 971  T
101 atttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggagg 198  Q
      | ||| |||||| ||||| || |||||||||| | ||||||||| |||| ||| | |||||||||||||||||||||||||  |||||||||||||    
970 gatccttgtcaaaagcaaatatgtgcacatcttggattaactcaaccaatttagagttgcttgaacctaacacatccaacacatcatgggtttggagg 873  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 93 - 236
Target Start/End: Original strand, 8692444 - 8692587
Alignment:
93 atccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtt 192  Q
    ||||||||| | ||||||||||||||| |||||| ||||| ||| || ||| ||||||||||| |||| ||||||||| |||||||| |||||||| |||    
8692444 atccaaccaatccttatcaaaaccaaagttgcgcgcatctagtagtagctccacaaattcagagtggcatgaacctaatacatccaagacactatgagtt 8692543  T
193 tggaggaatttcaatagatcagctaggcagttgtaggcataacc 236  Q
    |  |||||||||||||| ||||| ||  ||||||||||| ||||    
8692544 tcaaggaatttcaatagctcagccagtaagttgtaggcacaacc 8692587  T

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