View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16399_high_19 (Length: 253)
Name: NF16399_high_19
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16399_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 9816168 - 9816355
Alignment:
| Q |
6 |
agtttggaggaagattctgaagatgcaaatcaaagcaaagaagcaaggatttatggtgacagagtttctttatctgagactcaaggtgaaagcaaacac- |
104 |
Q |
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| T |
9816168 |
agtttggaggaagattctgaagatgcaaatcgaagcaaagaagcaaggatttatggtgacagagtctgtttatctgagactcaaggtgaaagcaaacact |
9816267 |
T |
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| Q |
105 |
-ttctatgaggaaaaaagtctcttcattcaacaatgtaactgttgtggagcaagatcttcagtttcgctctgatatttctgctcacgc |
191 |
Q |
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| T |
9816268 |
tttctatgaggaaaaaagtctcttcattcaacaatgtaactgtcgtggagcaagatcttcagtttcgctctgatatttctgctcacgc |
9816355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 26353911 - 26353730
Alignment:
| Q |
6 |
agtttggaggaagattctgaagatgcaaatcaaagcaaagaagcaaggatttatggtgacagagtttctttatctgagactcaaggtgaaagcaaacact |
105 |
Q |
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| T |
26353911 |
agtttggaggaagattatgaagattcaaatgggaacaaagaagcaaggatg-at--tgacagagtctgtttatctgagactcaaggtgaaagcaaacggt |
26353815 |
T |
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| Q |
106 |
t--ctatgaggaaaaaagtctcttcattcaacaatgtaactgttgtggagcaagatcttcagtttcgctctgatatttctgctca |
188 |
Q |
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| T |
26353814 |
tttctatcacaaaaaaagtctcttcgtccaacaatgtaactgttacggagcaagatcttcagtttttcccggatatttctgctca |
26353730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 26648249 - 26648405
Alignment:
| Q |
6 |
agtttggaggaagattctgaagatgcaaatcaaagcaaagaagcaaggatttatggtgacagagtttctttatctgagactcaaggtgaaagca--aaca |
103 |
Q |
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| T |
26648249 |
agtttggaggatgattctgaagatgcaaatgggagcaaacaagcaaggatgtctaatgacagagtctgtttatctgagactcaaggtgaaagcaagaact |
26648348 |
T |
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| Q |
104 |
cttctatgaggaaaaaagtctcttcattcaacaatgtaactgttgtggagcaagatc |
160 |
Q |
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| T |
26648349 |
tttttatcagaaaaaaggtcccttcatccaacaatgtaactgctgtacagcaagatc |
26648405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 20015185 - 20015001
Alignment:
| Q |
6 |
agtttggaggaagattctgaagatgcaaatcaaagcaaagaagcaaggatttatggtgacagagtttctttatctgagactcaaggtgaaagcaaaca-- |
103 |
Q |
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| T |
20015185 |
agtttggaagaacattttgaagatgcaaatgggagcaaggaagtaaggatgactagtgacagagtctgtttatctgagactcaagctgaaagcaaacagt |
20015086 |
T |
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| Q |
104 |
cttctatgaggaaaaaagtctcttcattcaacaatgtaactgttgtggagcaagatcttcagtttcgctctgatatttctgctca |
188 |
Q |
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| T |
20015085 |
tttctatcagaaaaaaagtctctttgtccaacaatgtggctgttgcgcagaaaaatcttcagtttcactatggtatttctactca |
20015001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 20035491 - 20035437
Alignment:
| Q |
42 |
aaagaagcaaggatttatggtgacagagtttctttatctgagactcaaggtgaaa |
96 |
Q |
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| T |
20035491 |
aaagaagcaaggatttctagtgacaaagtttgtttatctgagactcaaggtgaaa |
20035437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 19850185 - 19850259
Alignment:
| Q |
25 |
aagatgcaaatcaaagcaaagaagcaaggatttatggtgacagagtttctttatctgagactcaaggtgaaagca |
99 |
Q |
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| T |
19850185 |
aagatgcaaatgagagcaaaaaagaaaggatttgtagtgaccgagtgtgcttatctgagactcaaggtgaaagca |
19850259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 20007256 - 20007166
Alignment:
| Q |
6 |
agtttggaggaagattctgaagatgcaaatcaaagcaaagaagcaaggatttatggtgacagagtttctttatctgagactcaaggtgaaa |
96 |
Q |
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| T |
20007256 |
agttttgaagaagattatgaagatgcaaatgggagcaaagaagcaagaatgtctagtgacagtctctgtttatctgagactcaaggtgaaa |
20007166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 26654282 - 26654367
Alignment:
| Q |
12 |
gaggaagattctgaagatgcaaatcaaagcaaagaagcaaggatttatggtgacagagtttctttatctgagactcaaggtgaaag |
97 |
Q |
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| T |
26654282 |
gaggatgattttgaagatgcaaatggaagaaaagaagcatggaagtctaatgacagagcctttttatctgagactcaaggtgaaag |
26654367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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