View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16399_high_21 (Length: 235)

Name: NF16399_high_21
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16399_high_21
NF16399_high_21
[»] chr1 (50 HSPs)
chr1 (16-199)||(9157301-9157484)
chr1 (51-196)||(4608990-4609135)
chr1 (79-193)||(48993944-48994058)
chr1 (69-193)||(37155043-37155167)
chr1 (90-193)||(29179635-29179738)
chr1 (90-196)||(32540786-32540892)
chr1 (90-194)||(1091582-1091686)
chr1 (78-194)||(17127590-17127706)
chr1 (101-193)||(36290456-36290548)
chr1 (79-193)||(5995366-5995480)
chr1 (96-187)||(44706828-44706919)
chr1 (89-183)||(45728294-45728388)
chr1 (54-160)||(46333948-46334054)
chr1 (114-194)||(21630038-21630118)
chr1 (54-193)||(48498412-48498550)
chr1 (51-133)||(1819488-1819570)
chr1 (54-160)||(34062239-34062345)
chr1 (60-158)||(47303427-47303525)
chr1 (128-196)||(48993911-48993979)
chr1 (69-160)||(8337869-8337959)
chr1 (85-160)||(29371398-29371473)
chr1 (119-184)||(28395643-28395708)
chr1 (79-160)||(33219603-33219684)
chr1 (90-150)||(741540-741600)
chr1 (67-187)||(19711195-19711313)
chr1 (128-196)||(29179591-29179659)
chr1 (128-196)||(29371444-29371512)
chr1 (128-194)||(5995445-5995511)
chr1 (90-196)||(15220814-15220911)
chr1 (51-152)||(5694889-5694989)
chr1 (128-193)||(17127561-17127626)
chr1 (128-196)||(49444907-49444975)
chr1 (126-193)||(46931994-46932061)
chr1 (69-160)||(48604964-48605055)
chr1 (87-193)||(49444948-49445043)
chr1 (54-132)||(28928781-28928859)
chr1 (90-158)||(38674543-38674609)
chr1 (128-196)||(15220887-15220955)
chr1 (128-183)||(32540755-32540810)
chr1 (128-195)||(33219649-33219716)
chr1 (135-194)||(46932065-46932123)
chr1 (138-194)||(31342259-31342315)
chr1 (162-193)||(4609097-4609128)
chr1 (54-112)||(48823887-48823945)
chr1 (163-196)||(48823888-48823921)
chr1 (67-123)||(2573170-2573226)
chr1 (164-196)||(9157413-9157445)
chr1 (78-114)||(17127640-17127676)
chr1 (128-160)||(37155122-37155154)
chr1 (58-114)||(46334022-46334078)
[»] chr8 (30 HSPs)
chr8 (54-193)||(8243390-8243529)
chr8 (79-193)||(5033158-5033272)
chr8 (54-196)||(34229635-34229777)
chr8 (79-193)||(35440996-35441110)
chr8 (79-193)||(33841618-33841732)
chr8 (97-196)||(5667091-5667190)
chr8 (79-194)||(8796418-8796533)
chr8 (79-193)||(10086754-10086868)
chr8 (79-193)||(45191154-45191268)
chr8 (128-196)||(5033237-5033305)
chr8 (91-196)||(43844510-43844613)
chr8 (128-196)||(33841585-33841653)
chr8 (128-196)||(35440963-35441031)
chr8 (97-160)||(6296635-6296698)
chr8 (78-196)||(4958594-4958710)
chr8 (54-160)||(34541805-34541911)
chr8 (135-186)||(10086840-10086891)
chr8 (120-193)||(2581822-2581895)
chr8 (79-160)||(39850985-39851066)
chr8 (128-196)||(8796498-8796566)
chr8 (90-141)||(31159900-31159951)
chr8 (127-193)||(22649842-22649908)
chr8 (128-196)||(4958675-4958742)
chr8 (79-127)||(35031641-35031689)
chr8 (54-196)||(1880233-1880373)
chr8 (128-193)||(5667173-5667238)
chr8 (143-196)||(39851046-39851099)
chr8 (135-194)||(45191123-45191182)
chr8 (162-196)||(34229742-34229776)
chr8 (54-114)||(6296607-6296667)
[»] chr5 (41 HSPs)
chr5 (54-196)||(3180062-3180203)
chr5 (51-196)||(16439132-16439277)
chr5 (89-196)||(12913797-12913904)
chr5 (90-193)||(19655155-19655258)
chr5 (79-193)||(291094-291208)
chr5 (57-193)||(19598329-19598464)
chr5 (90-176)||(29699381-29699467)
chr5 (51-160)||(16802474-16802583)
chr5 (79-196)||(28818920-28819028)
chr5 (79-193)||(3899845-3899950)
chr5 (79-160)||(16971174-16971255)
chr5 (128-196)||(16971220-16971288)
chr5 (128-196)||(2953266-2953334)
chr5 (128-196)||(3899915-3899983)
chr5 (91-196)||(26662402-26662498)
chr5 (91-196)||(26933997-26934093)
chr5 (85-186)||(30117861-30117962)
chr5 (101-186)||(39031200-39031285)
chr5 (128-196)||(29699443-29699511)
chr5 (90-158)||(38134411-38134479)
chr5 (79-158)||(2093964-2094043)
chr5 (128-194)||(19655234-19655300)
chr5 (135-196)||(291180-291241)
chr5 (128-196)||(2093931-2093999)
chr5 (90-141)||(2953239-2953290)
chr5 (135-194)||(32485632-32485691)
chr5 (135-196)||(2356355-2356415)
chr5 (135-196)||(30117822-30117883)
chr5 (128-191)||(12913879-12913942)
chr5 (128-194)||(26662475-26662542)
chr5 (128-194)||(26934070-26934137)
chr5 (135-196)||(13312258-13312319)
chr5 (91-184)||(2935869-2935961)
chr5 (164-196)||(3180063-3180095)
chr5 (54-114)||(26662401-26662461)
chr5 (54-114)||(26933996-26934056)
chr5 (54-113)||(28818919-28818978)
chr5 (128-187)||(28818993-28819052)
chr5 (126-196)||(1638451-1638521)
chr5 (154-187)||(39777054-39777087)
chr5 (143-187)||(22083001-22083045)
[»] chr3 (32 HSPs)
chr3 (54-194)||(33689172-33689312)
chr3 (54-187)||(43139711-43139844)
chr3 (51-196)||(55223226-55223371)
chr3 (92-196)||(30734442-30734546)
chr3 (79-193)||(51046100-51046214)
chr3 (90-187)||(47492085-47492182)
chr3 (51-196)||(47677254-47677390)
chr3 (90-193)||(41752961-41753064)
chr3 (79-193)||(50549972-50550086)
chr3 (51-152)||(30476473-30476574)
chr3 (50-184)||(18321657-18321791)
chr3 (67-196)||(29031729-29031849)
chr3 (85-186)||(30580789-30580890)
chr3 (89-186)||(50524706-50524803)
chr3 (128-196)||(45103103-45103171)
chr3 (128-194)||(1801442-1801508)
chr3 (90-160)||(1801484-1801554)
chr3 (128-193)||(30734399-30734464)
chr3 (50-114)||(47677331-47677395)
chr3 (128-194)||(30580752-30580818)
chr3 (128-194)||(41753040-41753106)
chr3 (54-133)||(49418693-49418772)
chr3 (128-176)||(47492061-47492109)
chr3 (110-160)||(39385746-39385796)
chr3 (85-123)||(45103142-45103180)
chr3 (135-186)||(51046077-51046128)
chr3 (162-196)||(1272559-1272593)
chr3 (88-145)||(30904289-30904346)
chr3 (119-184)||(39057024-39057089)
chr3 (143-196)||(39429996-39430049)
chr3 (163-196)||(49414525-49414558)
chr3 (50-114)||(29031790-29031854)
[»] chr7 (28 HSPs)
chr7 (54-193)||(41018230-41018369)
chr7 (79-193)||(11016866-11016980)
chr7 (79-193)||(38975802-38975916)
chr7 (57-193)||(34854700-34854836)
chr7 (79-193)||(15027539-15027653)
chr7 (54-187)||(27028795-27028928)
chr7 (57-193)||(45231859-45231991)
chr7 (90-193)||(4290542-4290645)
chr7 (135-196)||(11016952-11017013)
chr7 (90-160)||(42628325-42628395)
chr7 (128-196)||(4290621-4290689)
chr7 (105-172)||(22764753-22764820)
chr7 (90-160)||(7671949-7672019)
chr7 (67-193)||(29053329-29053446)
chr7 (128-196)||(42628371-42628439)
chr7 (67-187)||(4649332-4649445)
chr7 (135-194)||(48000820-48000879)
chr7 (123-196)||(27028722-27028795)
chr7 (102-191)||(30217504-30217592)
chr7 (128-193)||(48000691-48000756)
chr7 (92-152)||(10419496-10419556)
chr7 (79-158)||(48000769-48000848)
chr7 (79-127)||(48000721-48000769)
chr7 (128-171)||(15027618-15027661)
chr7 (128-194)||(41945931-41945997)
chr7 (89-186)||(41945859-41945956)
chr7 (128-187)||(38975881-38975940)
chr7 (79-123)||(41084207-41084251)
[»] chr4 (46 HSPs)
chr4 (79-193)||(51265442-51265556)
chr4 (79-187)||(23444296-23444404)
chr4 (90-193)||(6271699-6271802)
chr4 (79-196)||(35682160-35682277)
chr4 (51-194)||(55089995-55090129)
chr4 (79-176)||(47661856-47661953)
chr4 (54-193)||(47404587-47404717)
chr4 (79-196)||(26186043-26186158)
chr4 (101-193)||(30861823-30861915)
chr4 (79-193)||(42375016-42375121)
chr4 (54-166)||(40789203-40789315)
chr4 (79-187)||(47762611-47762719)
chr4 (54-141)||(50384107-50384194)
chr4 (128-196)||(42375086-42375154)
chr4 (128-196)||(47661918-47661986)
chr4 (67-158)||(52028581-52028672)
chr4 (54-132)||(31430463-31430541)
chr4 (128-184)||(23444275-23444331)
chr4 (128-196)||(51265521-51265589)
chr4 (128-196)||(53954686-53954754)
chr4 (97-160)||(53954640-53954703)
chr4 (125-187)||(3862619-3862681)
chr4 (125-187)||(3871376-3871438)
chr4 (128-193)||(35682242-35682307)
chr4 (52-141)||(45591410-45591499)
chr4 (128-196)||(6271778-6271846)
chr4 (85-196)||(44379924-44380035)
chr4 (50-132)||(28693921-28694003)
chr4 (138-195)||(30709986-30710043)
chr4 (79-172)||(31532716-31532809)
chr4 (131-187)||(44380009-44380065)
chr4 (54-129)||(24006072-24006147)
chr4 (51-114)||(55090072-55090135)
chr4 (80-141)||(25818401-25818462)
chr4 (141-194)||(2325069-2325122)
chr4 (97-158)||(38714855-38714916)
chr4 (129-160)||(17285807-17285838)
chr4 (67-110)||(55089892-55089935)
chr4 (136-186)||(5048884-5048934)
chr4 (164-194)||(25617977-25618007)
chr4 (162-196)||(47404588-47404622)
chr4 (163-196)||(50384108-50384141)
chr4 (164-196)||(24006165-24006197)
chr4 (164-196)||(31430464-31430496)
chr4 (58-114)||(42375016-42375072)
chr4 (136-196)||(46321439-46321499)
[»] scaffold0586 (2 HSPs)
scaffold0586 (90-194)||(7085-7188)
scaffold0586 (128-189)||(7048-7109)
[»] chr2 (35 HSPs)
chr2 (79-193)||(16514421-16514535)
chr2 (58-176)||(15011294-15011412)
chr2 (79-193)||(29508717-29508832)
chr2 (89-196)||(24115914-24116021)
chr2 (90-176)||(6721965-6722051)
chr2 (79-160)||(38933617-38933698)
chr2 (79-196)||(14229380-14229487)
chr2 (71-196)||(2828587-2828703)
chr2 (67-194)||(2893968-2894086)
chr2 (79-194)||(14470619-14470733)
chr2 (70-152)||(37762019-37762101)
chr2 (58-187)||(9172987-9173116)
chr2 (128-196)||(14470586-14470654)
chr2 (128-196)||(16514500-16514568)
chr2 (50-119)||(14464553-14464622)
chr2 (90-193)||(6217262-6217356)
chr2 (79-160)||(37961736-37961817)
chr2 (128-192)||(6217222-6217286)
chr2 (128-196)||(38933663-38933731)
chr2 (97-196)||(8534140-8534239)
chr2 (97-160)||(29925615-29925678)
chr2 (144-194)||(45213892-45213942)
chr2 (131-196)||(14892339-14892404)
chr2 (128-187)||(29508693-29508753)
chr2 (128-187)||(14229356-14229415)
chr2 (128-186)||(33018621-33018679)
chr2 (128-194)||(37961782-37961848)
chr2 (135-196)||(6722034-6722095)
chr2 (135-196)||(32545871-32545932)
chr2 (60-114)||(2143948-2144002)
chr2 (79-153)||(14892298-14892371)
chr2 (128-194)||(24115996-24116062)
chr2 (128-196)||(14464558-14464617)
chr2 (107-176)||(1945461-1945530)
chr2 (54-114)||(2828586-2828646)
[»] chr6 (20 HSPs)
chr6 (68-187)||(551181-551300)
chr6 (97-196)||(24587455-24587554)
chr6 (92-196)||(17750897-17751000)
chr6 (79-157)||(24618628-24618706)
chr6 (51-152)||(10521848-10521949)
chr6 (90-193)||(12343106-12343200)
chr6 (50-196)||(24618595-24618741)
chr6 (128-196)||(17750978-17751046)
chr6 (91-145)||(13043502-13043556)
chr6 (110-160)||(31654335-31654385)
chr6 (51-196)||(2315303-2315439)
chr6 (128-184)||(12343176-12343232)
chr6 (128-193)||(24975749-24975814)
chr6 (139-196)||(7384482-7384539)
chr6 (128-196)||(13043533-13043601)
chr6 (67-114)||(10521925-10521972)
chr6 (136-169)||(2913848-2913881)
chr6 (157-196)||(6299168-6299208)
chr6 (157-196)||(6305978-6306018)
chr6 (54-114)||(31654307-31654367)
[»] scaffold0161 (2 HSPs)
scaffold0161 (90-193)||(27258-27361)
scaffold0161 (128-193)||(27217-27282)
[»] scaffold1033 (1 HSPs)
scaffold1033 (53-138)||(2265-2350)
[»] scaffold1029 (1 HSPs)
scaffold1029 (53-138)||(2265-2350)
[»] scaffold0047 (1 HSPs)
scaffold0047 (69-193)||(63763-63878)
[»] scaffold0016 (2 HSPs)
scaffold0016 (128-196)||(49697-49765)
scaffold0016 (80-160)||(49731-49811)
[»] scaffold0180 (2 HSPs)
scaffold0180 (128-196)||(19116-19184)
scaffold0180 (85-132)||(19155-19202)
[»] scaffold0481 (1 HSPs)
scaffold0481 (67-132)||(2902-2967)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 9157484 - 9157301
Alignment:
Q  16 atagggggaccagaattggtgtggatgnnnnnnntggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtga 115  Q
    |||||||||||| ||||||||||||||       |||||||||||||||| |||||||||||  |||| ||||||||||| ||| |||||||||||| ||    
T  9157484 atagggggaccaaaattggtgtggatgaaaaaaatggatagcacttgtgtgacatagagttggttgacattgatcaatcacaatatcacaatgcttgaga 9157385  T
Q  116 aagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgctgtc 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9157384 aagagagagaaacacaagcattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgttgtc 9157301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 4609135 - 4608990
Alignment:
Q  51 ggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgat 150  Q
    |||||| |||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  4609135 ggatagtacttgtgtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgat 4609036  T
Q  151 tggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
     ||||||||| ||| |||||||||||||| || |||||||||||||    
T  4609035 gggtcaatgtcaccgatgtcacccaactccatatcacacaagtgct 4608990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 48993944 - 48994058
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  48993944 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaact 48994043  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  48994044 ctatgtcacccaagt 48994058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 37155167 - 37155043
Alignment:
Q  69 atagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatg 168  Q
    ||||||||| ||||| |||  |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  37155167 atagagttgggtgacattggccaatcacaatgtcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccaatg 37155068  T
Q  169 tcacccaactctatgtcacacaagt 193  Q
    ||||| ||||||||||||| |||||    
T  37155067 tcaccaaactctatgtcacccaagt 37155043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 29179635 - 29179738
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||| |    
T  29179635 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccc 29179734  T
Q  190 aagt 193  Q
    ||||    
T  29179735 aagt 29179738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 32540786 - 32540892
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |||| |||||||||| |    
T  32540786 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatgtcaccaatgtcatccaattctatgtcaccc 32540885  T
Q  190 aagtgct 196  Q
    |||||||    
T  32540886 aagtgct 32540892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 1091582 - 1091686
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| || |||||| ||||||||||||||||||| |    
T  1091582 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcaccaatatcacccaactctatgtcaccc 1091681  T
Q  190 aagtg 194  Q
    |||||    
T  1091682 aagtg 1091686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 17127590 - 17127706
Alignment:
Q  78 agtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaac 177  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||| |||    
T  17127590 agtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtcactaatgtcacctaac 17127689  T
Q  178 tctatgtcacacaagtg 194  Q
    ||||| |||| ||||||    
T  17127690 tctatatcacccaagtg 17127706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 36290456 - 36290548
Alignment:
Q  101 tcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||    
T  36290456 tcacaatgcttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagt 36290548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 5995480 - 5995366
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||| | ||||    
T  5995480 gtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgttaccaatgtcatcaaact 5995381  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  5995380 ctatgtcacccaagt 5995366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 44706828 - 44706919
Alignment:
Q  96 aaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 187  Q
    ||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||| |||||| ||||||||||||||||||||||||||    
T  44706828 aaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 44706919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 45728388 - 45728294
Alignment:
Q  89 tcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatg 183  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||| | |||||| |||||||||||||||    
T  45728388 tcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatatcaccaatatcacccaactctatg 45728294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 46333948 - 46334054
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    ||||||||| || |||||||||||  |||| |||  |||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  46333948 tagcacttgggtgacatagagttggatgacattggccaatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcattgtgacattgtgattgg 46334047  T
Q  154 tcaatgt 160  Q
    |||||||    
T  46334048 tcaatgt 46334054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 21630118 - 21630038
Alignment:
Q  114 gaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||    
T  21630118 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactttatgtcacgcaagtg 21630038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 48498550 - 48498412
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    ||||||||| || ||||||||||| ||||| |||| |||||| ||||| || |||||||||||||||||||||||||||  ||||||  ||| ||||||     
T  48498550 tagcacttgggtgacatagagttg-gtgacattgaccaatcacaatgttaccatgcttgtgaaagagagagaaacacaaacattgtggtattatgattga 48498452  T
Q  154 tcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
     |||||| || ||||||||||||||||||||||| |||||    
T  48498451 ccaatgtcacaaatgtcacccaactctatgtcacccaagt 48498412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 1819488 - 1819570
Alignment:
Q  51 ggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaag 133  Q
    ||||||||||||  | ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1819488 ggatagcacttgaatgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaag 1819570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 34062345 - 34062239
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    ||||| ||| || ||||||||||| ||||| |||| |||||| |||||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||    
T  34062345 tagcatttgggtaacatagagttgggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacataagcattgtggcattgtgattgg 34062246  T
Q  154 tcaatgt 160  Q
     ||||||    
T  34062245 ccaatgt 34062239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 47303525 - 47303427
Alignment:
Q  60 ttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaat 158  Q
    |||||| ||||||||||  ||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  47303525 ttgtgtgacatagagttaggtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaat 47303427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 48993979 - 48993911
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  48993979 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgct 48993911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 8337869 - 8337959
Alignment:
Q  69 atagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    ||||||||| ||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||  |||||| |||||||||||||||||||    
T  8337869 atagagttg-gtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgattggtcaatgt 8337959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 29371473 - 29371398
Alignment:
Q  85 ttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  29371473 ttgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgt 29371398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 28395708 - 28395643
Alignment:
Q  119 agagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgt 184  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  28395708 agagagaaacacaagcattgtgacattgtgattggtcaatgtcaccaatgtcactcaactctatgt 28395643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 33219684 - 33219603
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||    
T  33219684 gtgacattgatcaatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcattgtaacattgtgattgatcaatgt 33219603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 741540 - 741600
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgat 150  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  741540 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgat 741600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 187
Target Start/End: Original strand, 19711195 - 19711313
Alignment:
Q  67 acatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaa 166  Q
    ||||||||||| ||||| |||| |||||| ||||| ||||||| ||||||  ||||||||||| ||| ||||||||||||| ||  | ||||||||||||    
T  19711195 acatagagttgggtgacattgaccaatcacaatgttacaatgcatgtgaa--agagagaaacataagaattgtgacattgtaatcagccaatgttaccaa 19711292  T
Q  167 tgtcacccaactctatgtcac 187  Q
    ||||||| |||| ||| ||||    
T  19711293 tgtcaccaaactttatatcac 19711313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 29179659 - 29179591
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||    
T  29179659 cacaagcattgtgacattgtgattggtcagtgtcaccaatgtcacccaactctatgtcatccaagtgct 29179591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 29371444 - 29371512
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  29371444 cacaagcattgtgacattgtgattggtcaatatcaccaatgtcacctagctctatgtcacacaagtgct 29371512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 5995445 - 5995511
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  5995445 cacaagcattgtggcattgtgattggtcaatgtcaccaatgtcatccaactctatgtcacccaagtg 5995511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 15220911 - 15220814
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||         |||||||||||||||||| ||||||| |    
T  15220911 caatcacaatctcacaatgcttgtgaaagagagagaaacacaagcattgtgagatcgtgattg---------accaatgtcacccaactccatgtcaccc 15220821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 5694889 - 5694989
Alignment:
Q  51 ggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgat 150  Q
    ||||| |||||| || ||||||||||  ||||| ||| ||||||| ||| | | |||||||||||||||||||||||||||| |||||||||||||| ||    
T  5694889 ggataacacttgagtgacatagagtttggtgacattggtcaatcacaatatta-aatgcttgtgaaagagagagaaacacaaatattgtgacattgtaat 5694987  T
Q  151 tg 152  Q
    ||    
T  5694988 tg 5694989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 17127626 - 17127561
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||||| |||||||||||||||||||||||||| || ||||||||| |||||||| ||||||||||    
T  17127626 cacaagcattgtgacattgtgattggtcaatgtcactaatgtcacctaactctatatcacacaagt 17127561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 49444975 - 49444907
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||| |||||||||||| || |||| |||||||||||||||||||||||||| ||||||||    
T  49444975 cacaagcattgtaacattgtgattgatcgatgtcaccaatgtcacccaactctatgtcacccaagtgct 49444907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 46932061 - 46931994
Alignment:
Q  126 aacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||||||  |||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  46932061 aacacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 46931994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 48604964 - 48605055
Alignment:
Q  69 atagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    ||||||||  ||||| ||| ||||||| |||||||||||  ||||||||||||||||||| |||| ||||||||||| | ||||| ||||||    
T  48604964 atagagttaggtgacattggtcaatcacaatgtcacaatatttgtgaaagagagagaaacgcaagcattgtgacattataattggccaatgt 48605055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 49444948 - 49445043
Alignment:
Q  87 gatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtca 186  Q
    ||||||||| ||||| |||||||||||||  |||||||||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  49444948 gatcaatcacaatgttacaatgcttgtga--gagagagaaacacaagcattgtggcattgtgattgg---------ccaatgtcacccaactctatgtca 49445036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 28928781 - 28928859
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaa 132  Q
    ||||||||| || ||||||||||  ||||| |||  |||||| ||||||||| ||||||||||||||||||||||||||    
T  28928781 tagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacagtgcttgtgaaagagagagaaacacaa 28928859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 38674543 - 38674609
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaat 158  Q
    |||||| ||||||||||||||||||||  ||||||||||||||| ||||||||||| ||||||| ||||    
T  38674543 caatcacaatgtcacaatgcttgtgaa--agagagaaacacaagcattgtgacattatgattggccaat 38674609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 15220887 - 15220955
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||||| ||||||||||| |||| | |||||||||||||||||||||||||| ||| ||||    
T  15220887 cacaagcattgtgagattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaaatgct 15220955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 32540810 - 32540755
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatg 183  Q
    |||||| ||||||||||||||||||| |||||  ||||||||||||||||||||||    
T  32540810 cacaagcattgtgacattgtgattggccaatgccaccaatgtcacccaactctatg 32540755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 33219649 - 33219716
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgc 195  Q
    |||||| ||| |||||||||||||| ||||||| |||||||||| |||||||||||| || |||||||    
T  33219649 cacaagcattatgacattgtgattgatcaatgtcaccaatgtcatccaactctatgttacccaagtgc 33219716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 46932065 - 46932123
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||| ||||||||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  46932065 attgtggcattgtgattggtcaatgtcaccaatgtca-ccaactctatgtcacccaagtg 46932123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 31342315 - 31342259
Alignment:
Q  138 gtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||||||||||||| |||||| | |  ||||||||||||||||||||| ||||||    
T  31342315 gtgacattgtgattggccaatgtcatcggtgtcacccaactctatgtcacccaagtg 31342259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 193
Target Start/End: Original strand, 4609097 - 4609128
Alignment:
Q  162 accaatgtcacccaactctatgtcacacaagt 193  Q
    ||||||||||||||||||||||||||||||||    
T  4609097 accaatgtcacccaactctatgtcacacaagt 4609128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 48823887 - 48823945
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttg 112  Q
    ||||||||| || ||||||||||| ||||| |||  |||||| ||||||||||||||||    
T  48823887 tagcacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttg 48823945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 48823921 - 48823888
Alignment:
Q  163 ccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||||||||||||||||||||| ||||||||    
T  48823921 ccaatgtcacccaactctatgtcacccaagtgct 48823888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 2573170 - 2573226
Alignment:
Q  67 acatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagaga 123  Q
    ||||||||||||||||  ||||  ||||| ||| ||||||||||||||||| |||||    
T  2573170 acatagagttgagtgatattgactaatcacaatatcacaatgcttgtgaaaaagaga 2573226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 9157413 - 9157445
Alignment:
Q  164 caatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||| ||||||||||||||||||||||||    
T  9157413 caatgtcaaccaactctatgtcacacaagtgct 9157445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 17127676 - 17127640
Alignment:
Q  78 agtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    |||||| |||| |||||||||||||||||||||||||    
T  17127676 agtgacattgaccaatcaaaatgtcacaatgcttgtg 17127640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 37155122 - 37155154
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgt 160  Q
    |||||||||||||||||||||||||| ||||||    
T  37155122 cacaagtattgtgacattgtgattggccaatgt 37155154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 46334078 - 46334022
Alignment:
Q  58 acttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    ||||| || |||||||||||  |||| |||| |||||| ||||||||||||||||||    
T  46334078 acttgggtgacatagagttggatgacattgaccaatcacaatgtcacaatgcttgtg 46334022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 8243390 - 8243529
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    ||||||||| || ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||     
T  8243390 tagcacttgggtgacatagagttgagtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattga 8243489  T
Q  154 tcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
     ||| || |||||||||||||||||||||||||| |||||    
T  8243490 ccaacgtcaccaatgtcacccaactctatgtcacccaagt 8243529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 5033272 - 5033158
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  5033272 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaact 5033173  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  5033172 ctatgtcacccaagt 5033158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 34229777 - 34229635
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    |||||||||||| ||||||||||  ||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||     
T  34229777 tagcacttgtgtgacatagagttaggtgacattggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattga 34229678  T
Q  154 tcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
       |||| || ||||||||||||||||||||||||||||||||    
T  34229677 ctcatgtcactaatgtcacccaactctatgtcacacaagtgct 34229635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 35440996 - 35441110
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||    
T  35440996 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaact 35441095  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  35441096 ctatgtcacccaagt 35441110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 33841618 - 33841732
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| | ||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||||||    
T  33841618 gtgacattgaccaatcacattgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattctgattggtcaatgtcaccaatgtcacccaact 33841717  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  33841718 ctatgtcacccaagt 33841732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 5667190 - 5667091
Alignment:
Q  97 aatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||  |||||| |||||||||| ||||||||||||||| ||||||||    
T  5667190 aatgtcataatgcttgtgaaagagagagaaatacaagcattgtgacattgtgattgaccaatgtcaccaatgtcatccaactctatgtcacccaagtgct 5667091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 8796533 - 8796418
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  |||| | || ||| ||||| ||||    
T  8796533 gtgacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaacacaagcattgtgacattgtgattgaccaatatcacaaatatcacctaact 8796434  T
Q  179 ctatgtcacacaagtg 194  Q
    ||||||||| ||||||    
T  8796433 ctatgtcacccaagtg 8796418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 10086868 - 10086754
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| |||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||  |||||| || |||||||||||| |    
T  10086868 gtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgaccaatgtcactaatgtcacccaatt 10086769  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  10086768 ctatgtcacccaagt 10086754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 45191154 - 45191268
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| ||||| ||||| |||| |||||||||| ||||||||||||||||||||  ||||| ||||| |||||||||||||| |||||| ||| ||||||    
T  45191154 gtgacattgattaatcacaatgccacaatgcttatgaaagagagagaaacacaaacattgtaacattttgattggtcaatgtcaccaatatcatccaact 45191253  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  45191254 ctatgtcacccaagt 45191268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 5033237 - 5033305
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  5033237 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgct 5033305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 43844510 - 43844613
Alignment:
Q  91 aatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacaca 190  Q
    ||||| |||||||  ||||||||||  |||||||||||||||| |||||||||||||||||| ||||| | |||||||||| ||||||||||||||| ||    
T  43844510 aatcataatgtcaggatgcttgtga--gagagagaaacacaagcattgtgacattgtgattgatcaatatcaccaatgtcatccaactctatgtcaccca 43844607  T
Q  191 agtgct 196  Q
    | ||||    
T  43844608 attgct 43844613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 33841653 - 33841585
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  33841653 cacaagcattgtgacaatgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgct 33841585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 35441031 - 35440963
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  35441031 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgct 35440963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 6296698 - 6296635
Alignment:
Q  97 aatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  6296698 aatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgt 6296635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 4958710 - 4958594
Alignment:
Q  78 agtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaac 177  Q
    |||||| |||| |||||| || |||||||| ||||||||||||||||||||||||  ||| ||||||||||||||| |||||| | |||| ||| | ||     
T  4958710 agtgacattgaccaatcacaa-gtcacaatacttgtgaaagagagagaaacacaaacattatgacattgtgattggccaatgtcatcaatatca-caaat 4958613  T
Q  178 tctatgtcacacaagtgct 196  Q
    |||||||||||||||||||    
T  4958612 tctatgtcacacaagtgct 4958594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 34541805 - 34541911
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    ||||||||| || ||||| ||||| ||||| |||  |||||| ||| ||||||||||||||||||||||||||||||||| |||||| |||| || | ||    
T  34541805 tagcacttgggtgacataaagttgggtgacattggccaatcataatatcacaatgcttgtgaaagagagagaaacacaagcattgtggcattttgctagg 34541904  T
Q  154 tcaatgt 160  Q
    |||||||    
T  34541905 tcaatgt 34541911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 10086840 - 10086891
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtca 186  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10086840 attgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 2581895 - 2581822
Alignment:
Q  120 gagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||||||||||||| |||||| |||||||||||| |||||| | ||||||||||||| |||||||||| |||||    
T  2581895 gagagaaacacaagcattgtggcattgtgattggccaatgtcaacaatgtcacccaattctatgtcacccaagt 2581822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 39851066 - 39850985
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    ||||| |||| |||||| ||| | | ||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||    
T  39851066 gtgacattgaccaatcacaatattataatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgt 39850985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 8796498 - 8796566
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||||||||| |||||||||||||| |||||| ||||| | |||||||||||||| |||||    
T  8796498 cacaagcattgtgacattttgattggtcaatgtcaccaatatcacctagctctatgtcacacatgtgct 8796566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 31159951 - 31159900
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtga 141  Q
    |||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  31159951 caatcataatgtcacaatgcttgtgaaagagagagaaacaaaaatattgtga 31159900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 22649908 - 22649842
Alignment:
Q  127 acacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    ||||||| |||||| |||||||||| | |||||| ||||||||||| |||||||||||||| |||||    
T  22649908 acacaagcattgtggcattgtgattagccaatgtcaccaatgtcactcaactctatgtcacccaagt 22649842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 4958675 - 4958742
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||||||||||| ||||||||||||||||| || ||| ||| | ||||||||||||| ||||||||    
T  4958675 cacaagtattgtgac-ttgtgattggtcaatgtcactaatatcatctaactctatgtcacgcaagtgct 4958742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 35031641 - 35031689
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaa 127  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  35031641 gtgacattgatcaatcacaatgtcgcaatgcttgtgaaagagagagaaa 35031689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 1880373 - 1880233
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    ||||||||| || ||||||| ||| ||||| ||| ||||||| ||||||||| | ||| ||||||||||  ||| |      || |||||||||||||||    
T  1880373 tagcacttgggtgacatagaattg-gtgacattggtcaatcacaatgtcacagtccttatgaaagagagcaaaaaaggccatttatgacattgtgattgg 1880275  T
Q  154 tcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||| |||| ||||| |||| |||||||||| ||||||||    
T  1880274 tcaatgtcaccagtgtca-ccaattctatgtcacccaagtgct 1880233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 5667173 - 5667238
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||||| ||| ||||||||| ||||| |||||| |||||||||| | ||||||||||||| |||||    
T  5667173 cacaagcattatgacattgtaattggccaatgtcaccaatgtcatcaaactctatgtcacccaagt 5667238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 39851046 - 39851099
Alignment:
Q  143 attgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||  ||||||||    
T  39851046 attgtgattggtcaatgtcaccaatgtcactcaactttatgtcatccaagtgct 39851099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 45191182 - 45191123
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||| ||||||||||  ||||||| |||||| ||| ||||||||||||||| ||||||    
T  45191182 attgtggcattgtgattaatcaatgtcaccaatatcatccaactctatgtcacccaagtg 45191123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 34229742 - 34229776
Alignment:
Q  162 accaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||| ||||||||||||||||||||||    
T  34229742 accaatgtcacctaactctatgtcacacaagtgct 34229776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 6296607 - 6296667
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    |||||||||  | ||||||||||| ||||| |||| |||||| ||||||| ||||||||||    
T  6296607 tagcacttggatgacatagagttgggtgacattgaccaatcacaatgtcataatgcttgtg 6296667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 3180062 - 3180203
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    |||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| |||||||||||     
T  3180062 tagcacttgtgtgacatagagttgggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattga 3180161  T
Q  154 tcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
     |||||| |||||||| | |||||||||||| |||||||||||    
T  3180162 ccaatgtcaccaatgtta-ccaactctatgtgacacaagtgct 3180203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 16439277 - 16439132
Alignment:
Q  51 ggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgat 150  Q
    ||||| || |||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16439277 ggataacatttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgat 16439178  T
Q  151 tggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||  |||||| |||||| | |||||||||||| |||  ||||||||    
T  16439177 tgaccaatgtcaccaatattacccaactctatatcatccaagtgct 16439132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 12913904 - 12913797
Alignment:
Q  89 tcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcaca 188  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||    
T  12913904 tcaatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacattgtgattggccaatgtcaccaatgtcactcaactatatgtcaca 12913805  T
Q  189 caagtgct 196  Q
    ||||||||    
T  12913804 caagtgct 12913797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 19655258 - 19655155
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| ||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| |||||| |||||||||||||||||||||||||| |    
T  19655258 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccc 19655159  T
Q  190 aagt 193  Q
    ||||    
T  19655158 aagt 19655155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 291208 - 291094
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| ||||||||||| |||||||||||| |||||||||||| ||||| ||||| |||||| |||||||||||| |||||| |||||||||||||||||    
T  291208 gtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaact 291109  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  291108 ctatgtcactcaagt 291094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 57 - 193
Target Start/End: Complemental strand, 19598464 - 19598329
Alignment:
Q  57 cacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtca 156  Q
    |||||| || ||||||||||| ||||| || | |||||| ||||||| ||||||||||||||||||||||||||||| ||||||  ||||||||||  ||    
T  19598464 cacttgggtgacatagagttgggtgacattaaccaatcataatgtca-aatgcttgtgaaagagagagaaacacaagcattgtggtattgtgattgacca 19598366  T
Q  157 atgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||| |||||||| ||||||||||||||||| |||||    
T  19598365 atgtcaccaatgttacccaactctatgtcacccaagt 19598329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 29699467 - 29699381
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaa 176  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||    
T  29699467 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 29699381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 16802583 - 16802474
Alignment:
Q  51 ggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgat 150  Q
    |||||||||||  || | ||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||    
T  16802583 ggatagcacttaagtgatatagagttgagtgacattgaccaatcagaatgtcacaatgcttgtaaaagagagagaaacacaaatattgttacattgtgat 16802484  T
Q  151 tggtcaatgt 160  Q
    ||| ||||||    
T  16802483 tggccaatgt 16802474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 28819028 - 28818920
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||         |||||||||||||||||    
T  28819028 gtgacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgtgattg---------accaatgtcacccaact 28818938  T
Q  179 ctatgtcacacaagtgct 196  Q
    ||||||||| ||||||||    
T  28818937 ctatgtcacccaagtgct 28818920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 3899950 - 3899845
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||         ||||||||||||||||    
T  3899950 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgg---------ccaatgtcacccaact 3899860  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  3899859 ctatgtcacccaagt 3899845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 16971255 - 16971174
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||    
T  16971255 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgt 16971174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 16971220 - 16971288
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  16971220 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgct 16971288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 2953266 - 2953334
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  2953266 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtgct 2953334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 3899915 - 3899983
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  3899915 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgct 3899983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 26662498 - 26662402
Alignment:
Q  91 aatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacaca 190  Q
    ||||| ||||||||||| ||||||||| ||||||||||||||| | ||| ||||||||||||||||         |||||||||||||||||||||||||    
T  26662498 aatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtca---------atgtcacccaactctatgtcacaca 26662408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 26934093 - 26933997
Alignment:
Q  91 aatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacaca 190  Q
    ||||| ||||||||||| ||||||||| ||||||||||||||| | ||| ||||||||||||||||         |||||||||||||||||||||||||    
T  26934093 aatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtca---------atgtcacccaactctatgtcacaca 26934003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 30117861 - 30117962
Alignment:
Q  85 ttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgt 184  Q
    |||| |||||| |||||||||||| || ||||| ||||||||||||||| |||||| |||| ||||||  |||| | |||||||||| ||||||||||||    
T  30117861 ttgaccaatcacaatgtcacaatgtttatgaaaaagagagaaacacaagcattgtggcattatgattgaccaatatcaccaatgtcatccaactctatgt 30117960  T
Q  185 ca 186  Q
    ||    
T  30117961 ca 30117962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 39031200 - 39031285
Alignment:
Q  101 tcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtca 186  Q
    ||||||||||||||||||| ||||||| |||| |||| ||| |||||||||| ||| ||| ||||||||||||| |||||||||||    
T  39031200 tcacaatgcttgtgaaagaaagagaaatacaaatattatgatattgtgattgatcagtgtcaccaatgtcaccccactctatgtca 39031285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 29699443 - 29699511
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||||||||||||||||| |||||| |||||| ||||||||||||||||||| ||||||||    
T  29699443 cacaagcattgtgacattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtgct 29699511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 38134411 - 38134479
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaat 158  Q
    |||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  38134411 caatcacaatgtcacaatgctagtgaaagagaaagaaacacaagcattgtgacattgtgattggccaat 38134479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 2093964 - 2094043
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaat 158  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||| | ||||||| ||||||    
T  2093964 gtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattatgatagtgtgattagtcaat 2094043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 19655234 - 19655300
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||    
T  19655234 cacaagcattgtgacattgtgattggacaatgtcaccaatgtcactcaactctatgtcacccaagtg 19655300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 291180 - 291241
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||||||    
T  291180 attgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatatcacccaagtgct 291241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 2093999 - 2093931
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||| |||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||    
T  2093999 cacaagcattatgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgct 2093931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 2953290 - 2953239
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtga 141  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  2953290 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtga 2953239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 32485632 - 32485691
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    ||||||| |||||||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  32485632 attgtgatattgtgattgatcaatgtcaccaatgtcacccaactctgtgtcacacaagtg 32485691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 2356355 - 2356415
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  2356355 attgtgacat-gtgattggccaatgtcaccaatgtcatccaactctatgtcacacaagtgct 2356415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 30117883 - 30117822
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||| |||| ||| ||||    
T  30117883 attgtgacattgtgattggtcaatatcaccaatgtcacccaactctatatcacccaaatgct 30117822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 12913879 - 12913942
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaa 191  Q
    |||||| ||| ||||||||||||||  |||| | ||||||||||||||||||||||||||||||    
T  12913879 cacaagcattatgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcacacaa 12913942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 26662475 - 26662542
Alignment:
Q  128 cacaagtattgtgacattgtgattggtc-aatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||||||||||||||||||||| | | ||||| |||||| ||||||||||||| ||||||||||||    
T  26662475 cacaagtattgtgacattgtgatttgaccaatgtcaccaatatcacccaactctaagtcacacaagtg 26662542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 26934070 - 26934137
Alignment:
Q  128 cacaagtattgtgacattgtgattggtc-aatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||||||||||||||||||||| | | ||||| |||||| ||||||||||||| ||||||||||||    
T  26934070 cacaagtattgtgacattgtgatttgaccaatgtcaccaatatcacccaactctaagtcacacaagtg 26934137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 13312319 - 13312258
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||| ||||||| | |||||||||| |||||||||||||  |||||||    
T  13312319 attgtgacattgtgattgatcaatgtcatcaatgtcacctaactctatgtcacctaagtgct 13312258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 2935869 - 2935961
Alignment:
Q  91 aatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgt 184  Q
    ||||| ||||||| |||| |||| ||||| ||||||||||||  |||||||||||||| ||| ||||| | | |||||||||| |||| |||||    
T  2935869 aatcacaatgtcataatgtttgtaaaagatagagaaacacaaacattgtgacattgtggttgttcaatatca-caatgtcaccaaactttatgt 2935961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 3180095 - 3180063
Alignment:
Q  164 caatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||||||||||||||||||    
T  3180095 caatgtcacccaactctatgtcacacaagtgct 3180063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 26662401 - 26662461
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    |||||||||||| ||||||||||| ||||| |||| |||||| ||||| ||| ||||||||    
T  26662401 tagcacttgtgtgacatagagttgggtgacattgaccaatcacaatgttacattgcttgtg 26662461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 26933996 - 26934056
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    |||||||||||| ||||||||||| ||||| |||| |||||| ||||| ||| ||||||||    
T  26933996 tagcacttgtgtgacatagagttgggtgacattgaccaatcacaatgttacattgcttgtg 26934056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 28818919 - 28818978
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgt 113  Q
    ||||||||| || ||||||||||| ||||| ||| ||||||| ||||||||||| |||||    
T  28818919 tagcacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatacttgt 28818978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 28818993 - 28819052
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 187  Q
    |||||| ||||||||||| ||||||  |||||| |||||| |||| ||||||||||||||    
T  28818993 cacaagcattgtgacattatgattgaccaatgtcaccaatatcactcaactctatgtcac 28819052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 1638521 - 1638451
Alignment:
Q  126 aacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||  ||||||||||||||||||| |||| | || ||| |||||||||||||| ||||  |||||||    
T  1638521 aacacaaacattgtgacattgtgattggccaatatcacaaatatcacccaactctatatcacctaagtgct 1638451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 39777087 - 39777054
Alignment:
Q  154 tcaatgttaccaatgtcacccaactctatgtcac 187  Q
    ||||||| ||||||||||||||||||||||||||    
T  39777087 tcaatgtcaccaatgtcacccaactctatgtcac 39777054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 22083045 - 22083001
Alignment:
Q  143 attgtgattggtcaatgttaccaatgtcacccaactctatgtcac 187  Q
    |||||||||||||||||| |  |||||||| ||||||||||||||    
T  22083045 attgtgattggtcaatgtcattaatgtcacacaactctatgtcac 22083001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 33689312 - 33689172
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    ||||||||| || |||| |||||| ||||| |||  |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  33689312 tagcacttgggtgacattgagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattga 33689213  T
Q  154 tcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
     |||| | | |||||||||||||||||||||||||||||||    
T  33689212 ccaatatcatcaatgtcacccaactctatgtcacacaagtg 33689172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 43139711 - 43139844
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    ||||||||| || ||||||||||| ||||| | | ||||||| ||||||| ||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  43139711 tagcacttgagtgacatagagttgggtgacatcggtcaatcacaatgtcagaatgcttgtgaaagagagagaaacacaagcattgtggcattgttattgg 43139810  T
Q  154 tcaatgttaccaatgtcacccaactctatgtcac 187  Q
     |||||| ||||||||||||||||||||||||||    
T  43139811 ccaatgtcaccaatgtcacccaactctatgtcac 43139844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 55223371 - 55223226
Alignment:
Q  51 ggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgat 150  Q
    |||||||||||| || |||||||||| |||||  ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| | | ||||||||    
T  55223371 ggatagcacttgggtgacatagagttaagtgatattggtcaatcataatgtcacaatgcttgtgaaagagagagaaacataagtattctaatattgtgat 55223272  T
Q  151 tggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||  |||| | |||||||||||| ||||||||||||||||||||||    
T  55223271 tgaccaatatcaccaatgtcacctaactctatgtcacacaagtgct 55223226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 30734442 - 30734546
Alignment:
Q  92 atcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaa 191  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||| |||    
T  30734442 atcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaa 30734541  T
Q  192 gtgct 196  Q
    |||||    
T  30734542 gtgct 30734546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 51046100 - 51046214
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| ||| || |||||||||||| |||||| |||||||||| ||||||    
T  51046100 gtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattatggcattgtgattggccaatgtcaccaatgtcatccaact 51046199  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  51046200 ctatgtcacccaagt 51046214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 47492085 - 47492182
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 187  Q
    |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||||||||||||||    
T  47492085 caatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaatatgaccaatgtcacccaactctatgtcac 47492182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 47677254 - 47677390
Alignment:
Q  51 ggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgat 150  Q
    ||||| ||||||||| ||||||||||  ||||| |||| | |||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  47677254 ggataacacttgtgtgacatagagtttggtgacattgaccgatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgat 47677353  T
Q  151 tggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||         | |||||||||||||||||||||||||||||||||    
T  47677354 tg---------atcaatgtcacccaactctatgtcacacaagtgct 47677390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 41753064 - 41752961
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| |||| |||||||||||||||||||| ||||||||||  |||||| |||||||||||| |||||| |||||||||||||||||||||||||| |    
T  41753064 caatcacaatgccacaatgcttgtgaaagagaaagaaacacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcaccc 41752965  T
Q  190 aagt 193  Q
    ||||    
T  41752964 aagt 41752961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 50550086 - 50549972
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||| ||||| | |||||||||||||||||| |||||| ||||||| ||    
T  50550086 gtgacattgatcaatcataatgtcataatgtttgtgaaagagagagaaacacaagcattgtaatattgtgattggtcaatgtcaccaatatcacccagct 50549987  T
Q  179 ctatgtcacacaagt 193  Q
     ||| |||| |||||    
T  50549986 ttatatcactcaagt 50549972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 30476473 - 30476574
Alignment:
Q  51 ggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgat 150  Q
    ||||||||||||||| ||| |||| |  ||||| |||  |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30476473 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgat 30476572  T
Q  151 tg 152  Q
    ||    
T  30476573 tg 30476574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 18321791 - 18321657
Alignment:
Q  50 tggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtga 149  Q
    |||||| ||||||  | |||||||||||  |||| ||| ||||||| ||||||||||||| ||||||| ||||| ||||||||   ||||||||||||||    
T  18321791 tggataacacttggatgacatagagttggatgacattggtcaatcacaatgtcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtga 18321692  T
Q  150 ttggtcaatgttaccaatgtcacccaactctatgt 184  Q
    |||  |||||| |||||| ||||||||||||||||    
T  18321691 ttgaccaatgtcaccaatatcacccaactctatgt 18321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 29031729 - 29031849
Alignment:
Q  67 acatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaa 166  Q
    ||||||||||  ||||  ||| ||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||         |||||    
T  29031729 acatagagttaggtgatattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtaattg---------accaa 29031819  T
Q  167 tgtcacccaactctatgtcacacaagtgct 196  Q
    | ||||| ||||||||||||||||||||||    
T  29031820 tatcacctaactctatgtcacacaagtgct 29031849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 30580789 - 30580890
Alignment:
Q  85 ttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgt 184  Q
    |||| |||||| |||||||||||  |||||||||||| ||||||||||| | ||||||||||||||||  |||||| || |||||||||||| |||||||    
T  30580789 ttgaccaatcataatgtcacaatatttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatgtcacaaatgtcacccaattctatgt 30580888  T
Q  185 ca 186  Q
    ||    
T  30580889 ca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 50524803 - 50524706
Alignment:
Q  89 tcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtca 186  Q
    ||||||| ||||| || |||||||||||||||||||||||||||  ||||||||||| |||||||||||||| | || | |||| |||||||||||||    
T  50524803 tcaatcacaatgttacgatgcttgtgaaagagagagaaacacaaacattgtgacattatgattggtcaatgtcatcattatcactcaactctatgtca 50524706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 45103171 - 45103103
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||    
T  45103171 cacaagcattgtgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaagtgct 45103103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 1801508 - 1801442
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  1801508 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtg 1801442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 1801484 - 1801554
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    |||||| |||| |||||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||    
T  1801484 caatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgt 1801554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 30734464 - 30734399
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||||| |||||||||||||||| ||||||||| | |||||||||| |||||||||||||||||||    
T  30734464 cacaagcattgtgacattgtgatcggtcaatgtcatcaatgtcaccaaactctatgtcacacaagt 30734399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 47677395 - 47677331
Alignment:
Q  50 tggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||| |||||    
T  47677395 tggatagcacttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatgtttgtg 47677331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 30580818 - 30580752
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    ||||| |||||||||||| |||||||||||| | ||||||||||||||| |||||||||| ||||||    
T  30580818 cacaaatattgtgacattatgattggtcaatatcaccaatgtcacccaattctatgtcactcaagtg 30580752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 41753040 - 41753106
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||| |||||| |||||||||||| |||||| ||||||||||| |||||||||||||| ||||||    
T  41753040 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcactcaactctatgtcacccaagtg 41753106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 49418693 - 49418772
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaag 133  Q
    ||||||||| || ||||||||||| ||||  ||| ||||||| ||||||| |||  ||||||||||||||||||||||||    
T  49418693 tagcacttgggtgacatagagttgggtgatattggtcaatcacaatgtcataatatttgtgaaagagagagaaacacaag 49418772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 47492109 - 47492061
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaa 176  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  47492109 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaa 47492061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 39385746 - 39385796
Alignment:
Q  110 ttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    |||||||||||||||||| |||| |||||| ||||||||||||| ||||||    
T  39385746 ttgtgaaagagagagaaatacaaatattgtaacattgtgattggccaatgt 39385796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 45103142 - 45103180
Alignment:
Q  85 ttgatcaatcaaaatgtcacaatgcttgtgaaagagaga 123  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  45103142 ttgatcaatcacaatgtcacaatgcttgtgaaagagaga 45103180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 51046128 - 51046077
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtca 186  Q
    ||||||||||| |||||| ||||||| |||||| ||| ||||||||||||||    
T  51046128 attgtgacattatgattgatcaatgtcaccaatatcatccaactctatgtca 51046077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 1272559 - 1272593
Alignment:
Q  162 accaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||||||||||| ||||||||    
T  1272559 accaatgtcacccaactctatgtcacccaagtgct 1272593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 30904346 - 30904289
Alignment:
Q  88 atcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacatt 145  Q
    |||||||| ||| |||||||  || | ||||||||||||||||||| |||||||||||    
T  30904346 atcaatcacaatatcacaatatttataaaagagagagaaacacaagcattgtgacatt 30904289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 39057024 - 39057089
Alignment:
Q  119 agagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgt 184  Q
    ||||||||||||||  || |||||||||| ||||  | |||| |||||||||||| ||||||||||    
T  39057024 agagagaaacacaaacatcgtgacattgtcattgtccgatgtcaccaatgtcacctaactctatgt 39057089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 39429996 - 39430049
Alignment:
Q  143 attgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||| |||||| || |||||||||||||| |||||||| ||||||||    
T  39429996 attgtgcttggccaatgtcactaatgtcacccaactttatgtcactcaagtgct 39430049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 49414525 - 49414558
Alignment:
Q  163 ccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||||||||||||||||||||| ||||||||    
T  49414525 ccaatgtcacccaactctatgtcacccaagtgct 49414558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 29031854 - 29031790
Alignment:
Q  50 tggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    |||||||||||||||| ||||||||||  ||||  ||| ||||| | |||||||||||| |||||    
T  29031854 tggatagcacttgtgtgacatagagttaggtgatattggtcaattacaatgtcacaatgtttgtg 29031790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 41018230 - 41018369
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    |||||||||  | ||||||||||| ||||| |||  |||||| |||||| |||||||||||||||||||||||||| ||| |||||| ||||||||||||    
T  41018230 tagcacttggatgacatagagttgggtgacattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattgg 41018329  T
Q  154 tcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  41018330 tcaatgtcaccaatgtcacccaactctatgtcacccaagt 41018369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 11016980 - 11016866
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| |||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||    
T  11016980 gtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaact 11016881  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  11016880 ctatgtcacccaagt 11016866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 38975916 - 38975802
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| ||||||||| | |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||  ||||||||||||||||||||||||    
T  38975916 gtgacattgatcaattataatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgttaccaatgtcacccaact 38975817  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  38975816 ctatgtcacccaagt 38975802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 57 - 193
Target Start/End: Original strand, 34854700 - 34854836
Alignment:
Q  57 cacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtca 156  Q
    |||||| || ||||||||||  ||||| |||  |||||| |||| |||||||||||||||||||| ||||||||||  |||||| |||||||||||  ||    
T  34854700 cacttgggtgacatagagtttggtgacattggccaatcacaatgccacaatgcttgtgaaagagatagaaacacaaacattgtggcattgtgattgacca 34854799  T
Q  157 atgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||| |||||||||||||||||||||||||| |||||    
T  34854800 atgtcaccaatgtcacccaactctatgtcacccaagt 34854836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 15027653 - 15027539
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||  |||||||||||||||||| ||||||||||  |||||    
T  15027653 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcaccaatgtcaaacaact 15027554  T
Q  179 ctatgtcacacaagt 193  Q
    |||||| || |||||    
T  15027553 ctatgttacccaagt 15027539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 27028795 - 27028928
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    ||||||||| || ||||||||||| || || |||  |||||| ||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||     
T  27028795 tagcacttgggtgacatagagttgggtaacattggacaatcacaatgtcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgattga 27028894  T
Q  154 tcaatgttaccaatgtcacccaactctatgtcac 187  Q
     |||||| |||||  |||||||| ||||||||||    
T  27028895 ccaatgtcaccaacatcacccaagtctatgtcac 27028928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 193
Target Start/End: Original strand, 45231859 - 45231991
Alignment:
Q  57 cacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtca 156  Q
    |||||| || ||||||||||| ||||| |||| |||||| |||| |||     |||||||||||||||||||| ||| ||||| ||||||||||||| ||    
T  45231859 cacttgggtgacatagagttgggtgacattgaccaatcacaatgccact----ttgtgaaagagagagaaacaaaagcattgtaacattgtgattggcca 45231954  T
Q  157 atgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||| |||||||||||||||||||||||||| |||||    
T  45231955 atgtcaccaatgtcacccaactctatgtcacccaagt 45231991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 4290645 - 4290542
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| ||||||||||| |||||||||||||||||||||| || |||||| |||||||||||  |||| | |||||| ||||||||||||||||||| |    
T  4290645 caatcacaatgtcacaattcttgtgaaagagagagaaacacgagcattgtggcattgtgattgaccaatatcaccaatatcacccaactctatgtcaccc 4290546  T
Q  190 aagt 193  Q
    ||||    
T  4290545 aagt 4290542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 11016952 - 11017013
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  11016952 attgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgct 11017013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 42628395 - 42628325
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    |||||| |||||| |||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||    
T  42628395 caatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgt 42628325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 4290621 - 4290689
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||||    
T  4290621 cacaagaattgtgacattgtgattggccaatgtcaccaatgtcacccaactgtatgtcacccaagtgct 4290689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 22764753 - 22764820
Alignment:
Q  105 aatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcac 172  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||| |||| | |||||||||||    
T  22764753 aatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcaccaatgtcac 22764820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 7671949 - 7672019
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    |||||| |||| |||||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||    
T  7671949 caatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgt 7672019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 29053329 - 29053446
Alignment:
Q  67 acatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaa 166  Q
    ||||||||||  ||||| |||  |||||| |||| | |||||||||||||||||||||||||||||  |||||| ||||||||||||         ||||    
T  29053329 acatagagtttggtgacattggccaatcacaatgcctcaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattgg---------ccaa 29053419  T
Q  167 tgtcacccaactctatgtcacacaagt 193  Q
    ||||||||||||||||||||| |||||    
T  29053420 tgtcacccaactctatgtcacccaagt 29053446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 42628371 - 42628439
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||| |||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||    
T  42628371 cacaagcattgggacattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaagtgct 42628439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 4649445 - 4649332
Alignment:
Q  67 acatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagaga--gagaaacacaagtattgtgacattgtgattggtcaatgttacc 164  Q
    ||||||||||  ||||| ||| ||||||| |||||||| ||||||||||||||||  |||||||||||| |||||  |||||||||||         |||    
T  4649445 acatagagtttggtgacattggtcaatcacaatgtcacgatgcttgtgaaagagagagagaaacacaagcattgtagcattgtgattg---------acc 4649355  T
Q  165 aatgtcacccaactctatgtcac 187  Q
    |||||||||||||||||||||||    
T  4649354 aatgtcacccaactctatgtcac 4649332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 48000820 - 48000879
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  48000820 attgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtgacccaagtg 48000879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 27028795 - 27028722
Alignment:
Q  123 agaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||||||| ||||||||||||||||||  |||||| ||||||||||| ||||| ||||||||  |||||||    
T  27028795 agaaacacaagcattgtgacattgtgattgtccaatgtcaccaatgtcactcaactatatgtcaccaaagtgct 27028722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 30217504 - 30217592
Alignment:
Q  102 cacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaa 191  Q
    |||||||||||||||||||||||||||| ||  ||| ||| |||||||||||  ||||| | |||||||| | |||||||||||||||||    
T  30217504 cacaatgcttgtgaaagagagagaaacataaacattttgatattgtgattggcgaatgtcatcaatgtca-caaactctatgtcacacaa 30217592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 48000756 - 48000691
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||||| |||||| ||||||||||| ||||||| |||||||||||||||||| ||||||| |||||    
T  48000756 cacaagcattgtggcattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcacccaagt 48000691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 10419556 - 10419496
Alignment:
Q  92 atcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattg 152  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||    
T  10419556 atcacaatgtcacaaaacttgtgaaagagagagaaacacaagtattgtaacattatgattg 10419496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 48000848 - 48000769
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaat 158  Q
    ||||| |||| |||||| |||| |||||||  ||||||||||||||||||||||  |||||| |||||||||||| ||||    
T  48000848 gtgacattgaccaatcacaatgccacaatgtctgtgaaagagagagaaacacaaacattgtggcattgtgattggccaat 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 48000721 - 48000769
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaa 127  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  48000721 gtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaa 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 15027618 - 15027661
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtca 171  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  15027618 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtca 15027661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 41945931 - 41945997
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||| ||||| ||||||||||||  |||| ||||||||||||| ||||| |||||||| ||||||    
T  41945931 cacaagcattgtaacattgtgattgaccaatattaccaatgtcactcaactttatgtcacccaagtg 41945997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 41945956 - 41945859
Alignment:
Q  89 tcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtca 186  Q
    ||||||| ||||| ||||||||||||||||||| | |||| |||  ||| ||||||| ||||||   ||||| | ||||||||| ||| |||||||||    
T  41945956 tcaatcacaatgttacaatgcttgtgaaagagaaaaaaacgcaaacattatgacattatgattgactaatgtcatcaatgtcactcaattctatgtca 41945859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 38975881 - 38975940
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 187  Q
    |||||| |||||| |||| | |||| ||||||| |||||||||||| |||||||||||||    
T  38975881 cacaagcattgtggcattataattgatcaatgtcaccaatgtcacctaactctatgtcac 38975940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 41084207 - 41084251
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagaga 123  Q
    ||||| ||||||||||| ||| ||||||| |||||||||||||||    
T  41084207 gtgacattgatcaatcataatatcacaatccttgtgaaagagaga 41084251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 51265556 - 51265442
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||    
T  51265556 gtgacattgaccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaact 51265457  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  51265456 ctatgtcacccaagt 51265442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 23444296 - 23444404
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||    
T  23444296 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaact 23444395  T
Q  179 ctatgtcac 187  Q
    |||||||||    
T  23444396 ctatgtcac 23444404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 6271802 - 6271699
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||| ||||||||||||||||||| |    
T  6271802 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcacccaactctatgtcaccc 6271703  T
Q  190 aagt 193  Q
    ||||    
T  6271702 aagt 6271699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 35682277 - 35682160
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| | |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |||||| ||||| ||||    
T  35682277 gtgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcaccaatatcacctaact 35682178  T
Q  179 ctatgtcacacaagtgct 196  Q
    ||||||||| ||||||||    
T  35682177 ctatgtcacccaagtgct 35682160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 55089995 - 55090129
Alignment:
Q  51 ggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgat 150  Q
    ||||| |||||| || ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  55089995 ggatatcacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtgat 55090094  T
Q  151 tggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    ||         ||||||||||| |||||||||||||| ||||||    
T  55090095 tg---------accaatgtcactcaactctatgtcacccaagtg 55090129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 47661953 - 47661856
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaa 176  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||    
T  47661953 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 47661856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 47404587 - 47404717
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    ||||||||| || ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||     
T  47404587 tagcacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacccaagcattgtggcattgtgattg- 47404685  T
Q  154 tcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
            |||||||||||||||||||||||||| |||||    
T  47404686 --------accaatgtcacccaactctatgtcacccaagt 47404717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 26186043 - 26186158
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||  ||||||||||| ||||||| ||||||||||| |||||| | |||||| ||||||||    
T  26186043 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgaaattgtgattggccaatgtcatcaatgttacccaact 26186140  T
Q  179 ctatgtcacacaagtgct 196  Q
    ||||||||| ||||||||    
T  26186141 ctatgtcacccaagtgct 26186158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 30861823 - 30861915
Alignment:
Q  101 tcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||| ||| ||||||||||||||| |||||    
T  30861823 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaactctatgtcacccaagt 30861915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 42375121 - 42375016
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||         |||||||||||||||||    
T  42375121 gtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattg---------accaatgtcacccaact 42375031  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  42375030 ctatgtcacccaagt 42375016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 40789315 - 40789203
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    ||||||||| || ||||||||||  ||||  |||  |||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  40789315 tagcacttgggtgacatagagtttggtgatattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattgg 40789216  T
Q  154 tcaatgttaccaa 166  Q
     |||||| |||||    
T  40789215 ccaatgtcaccaa 40789203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 187
Target Start/End: Complemental strand, 47762719 - 47762611
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| ||| |||| || ||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||||| || ||| |||| || ||    
T  47762719 gtgacattggtcaaccataatgtcacaatgcttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtcacaaatatcactcagct 47762620  T
Q  179 ctatgtcac 187  Q
    |||||||||    
T  47762619 ctatgtcac 47762611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 50384107 - 50384194
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtga 141  Q
    ||||||||| || ||||||||||| ||||| |||  |||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  50384107 tagcacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtga 50384194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 42375086 - 42375154
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||    
T  42375086 cacaagcattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaagtgct 42375154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 47661918 - 47661986
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  47661918 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaaatgct 47661986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 52028672 - 52028581
Alignment:
Q  67 acatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaat 158  Q
    ||||||| ||| ||||| |||  |||||| ||||||||||||||||||||||||||||||||||||  |||||||||| |||||||| ||||    
T  52028672 acatagaattgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatcgtgattggccaat 52028581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 31430463 - 31430541
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaa 132  Q
    ||||||||| || ||||||||||| ||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||    
T  31430463 tagcacttgggtgacatagagttgggtgacattgaccaatcacaatgtcacaatgcttatgaaagagagagaaacacaa 31430541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 23444331 - 23444275
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgt 184  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23444331 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgt 23444275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 51265521 - 51265589
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  51265521 cacaagcattgtgacattatgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgct 51265589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 53954686 - 53954754
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |||||||    
T  53954686 cacaagcattgtgacattgtaattggacaatgtcaccaatgtcacccaactctatgtcacaaaagtgct 53954754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 53954703 - 53954640
Alignment:
Q  97 aatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||    
T  53954703 aatgtcacaatgcttgtgaaagagtgagaaacactagcattgtgacattgtgattggccaatgt 53954640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 3862619 - 3862681
Alignment:
Q  125 aaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 187  Q
    ||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||||||||||    
T  3862619 aaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3862681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 3871376 - 3871438
Alignment:
Q  125 aaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 187  Q
    ||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||||||||||    
T  3871376 aaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3871438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 35682242 - 35682307
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||| |||||||||||||| ||||    
T  35682242 cacaagcattgtgacattgtgatcggtcaatgtcaccaatgtcacctaactctatgtcacataagt 35682307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 45591410 - 45591499
Alignment:
Q  52 gatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtga 141  Q
    |||| ||||||||| | ||||||||| ||| | ||  ||||||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  45591410 gataacacttgtgtgatatagagttgggtggcattcgtcaatcataatgtcacaatgcttgtgaaagagagagaaacacaaacattgtga 45591499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 6271778 - 6271846
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||||||||||||||||| |||||| |||||| |||| |||||||||||||| ||||||||    
T  6271778 cacaagcattgtgacattgtgattggccaatgtcaccaatatcactcaactctatgtcacccaagtgct 6271846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 44380035 - 44379924
Alignment:
Q  85 ttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgt 184  Q
    |||| |||||| ||||| ||||| ||| | ||| |||||||||| |||| ||||||||||| | ||||| ||||||  |||||||||| |||||||||||    
T  44380035 ttgaccaatcacaatgttacaatacttataaaatagagagaaacgcaagcattgtgacattataattggccaatgtcgccaatgtcactcaactctatgt 44379936  T
Q  185 cacacaagtgct 196  Q
    ||  ||||||||    
T  44379935 catccaagtgct 44379924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 28693921 - 28694003
Alignment:
Q  50 tggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaa 132  Q
    ||||||||||||| || ||||| |||||  |||| |||| |||||| ||| |||||||| |||||||||||||||||||||||    
T  28693921 tggatagcacttgggtgacataaagttggatgacattgaccaatcacaatatcacaatgtttgtgaaagagagagaaacacaa 28694003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 30709986 - 30710043
Alignment:
Q  138 gtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgc 195  Q
    |||||||||||||||| |||||| |||||||||||| ||||||||||||| |||||||    
T  30709986 gtgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtgc 30710043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 31532716 - 31532809
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcac 172  Q
    ||||| ||| ||||||| |||||||||||   ||| ||||||||||||| ||||  |||||||| ||||||||||||||||| ||| |||||||    
T  31532716 gtgacattgttcaatcacaatgtcacaatatatgtaaaagagagagaaatacaaacattgtgacgttgtgattggtcaatgtcacctatgtcac 31532809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 44380009 - 44380065
Alignment:
Q  131 aagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 187  Q
    ||||||||| |||||||||||||||||| | ||||||||||| ||||||||||||||    
T  44380009 aagtattgtaacattgtgattggtcaatatcaccaatgtcactcaactctatgtcac 44380065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 24006072 - 24006147
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaaca 129  Q
    ||||||||| || ||||| ||||| ||||| |||  |||||| |||| ||||||||||||||||||||||||||||    
T  24006072 tagcacttgggtgacatacagttgggtgacattggccaatcacaatgacacaatgcttgtgaaagagagagaaaca 24006147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 55090135 - 55090072
Alignment:
Q  51 ggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    ||||| |||||| || ||||||||||||||||| ||| ||||||| ||||||||||||||||||    
T  55090135 ggatatcacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtg 55090072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 25818401 - 25818462
Alignment:
Q  80 tgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtga 141  Q
    |||| ||| ||||||| |||||||||||| |||||||||||||||||||||||  |||||||    
T  25818401 tgacattggtcaatcacaatgtcacaatgattgtgaaagagagagaaacacaatcattgtga 25818462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 2325069 - 2325122
Alignment:
Q  141 acattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    ||||||||||| |||||||| | |||||||||| ||||||||||||| ||||||    
T  2325069 acattgtgatttgtcaatgtcatcaatgtcaccaaactctatgtcactcaagtg 2325122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 38714916 - 38714855
Alignment:
Q  97 aatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaat 158  Q
    |||||||||||| |||||||||| | ||||||| || |||| ||||||||||||||| ||||    
T  38714916 aatgtcacaatgtttgtgaaagaaatagaaacataaatattatgacattgtgattggccaat 38714855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 160
Target Start/End: Original strand, 17285807 - 17285838
Alignment:
Q  129 acaagtattgtgacattgtgattggtcaatgt 160  Q
    ||||||||||||||||||||||||||||||||    
T  17285807 acaagtattgtgacattgtgattggtcaatgt 17285838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 55089892 - 55089935
Alignment:
Q  67 acatagagttgagtgacgttgatcaatcaaaatgtcacaatgct 110  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||    
T  55089892 acatagagttgagtgacattggtcaatcacaatgtcacaatgct 55089935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 5048884 - 5048934
Alignment:
Q  136 ttgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtca 186  Q
    |||||||||| ||||||  |||||| | |||||||||||||||||||||||    
T  5048884 ttgtgacattatgattgaccaatgtcatcaatgtcacccaactctatgtca 5048934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 194
Target Start/End: Complemental strand, 25618007 - 25617977
Alignment:
Q  164 caatgtcacccaactctatgtcacacaagtg 194  Q
    |||||||||||||||||||||||||||||||    
T  25618007 caatgtcacccaactctatgtcacacaagtg 25617977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 47404622 - 47404588
Alignment:
Q  162 accaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||||||||||| ||||||||    
T  47404622 accaatgtcacccaactctatgtcacccaagtgct 47404588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 50384141 - 50384108
Alignment:
Q  163 ccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||||||||||||||||||||| ||||||||    
T  50384141 ccaatgtcacccaactctatgtcacccaagtgct 50384108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 24006165 - 24006197
Alignment:
Q  164 caatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||||||||| ||||||||    
T  24006165 caatgtcacccaactctatgtcacccaagtgct 24006197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 31430496 - 31430464
Alignment:
Q  164 caatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||||||||| ||||||||    
T  31430496 caatgtcacccaactctatgtcacccaagtgct 31430464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 42375016 - 42375072
Alignment:
Q  58 acttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    ||||| || ||||||||||| ||||| ||| ||||||| |||| |||||||||||||    
T  42375016 acttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgcttgtg 42375072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 46321439 - 46321499
Alignment:
Q  136 ttgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||||||||| ||||||||||| |||||| ||||| | | | ||||||| ||||||||    
T  46321439 ttgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagtgct 46321499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 7085 - 7188
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||    
T  7085 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccaatgtca-ccaactctatgtcacac 7183  T
Q  190 aagtg 194  Q
    |||||    
T  7184 aagtg 7188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 7109 - 7048
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| |||||||||||||||||||  ||| | ||||||||||||||||||||||||||||    
T  7109 cacaagcattgtgacattgtgattggctaatatcaccaatgtcacccaactctatgtcacac 7048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 16514535 - 16514421
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||| |||||| |||||||||||||||||    
T  16514535 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatgtcaccaatgtcacccaact 16514436  T
Q  179 ctatgtcacacaagt 193  Q
    ||||||||| |||||    
T  16514435 ctatgtcacccaagt 16514421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 15011412 - 15011294
Alignment:
Q  58 acttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaa 157  Q
    ||||| || ||||||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| |||    
T  15011412 acttgggtgacatagagttgagtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaa 15011313  T
Q  158 tgttaccaatgtcacccaa 176  Q
    | | |||||||||||||||    
T  15011312 tatcaccaatgtcacccaa 15011294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 29508717 - 29508832
Alignment:
Q  79 gtgacgttgatcaatca-aaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaac 177  Q
    ||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||| |||||| |||||| |||||||||    
T  29508717 gtgacattgaccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcaccaatatcacccaac 29508816  T
Q  178 tctatgtcacacaagt 193  Q
    |||||||||| |||||    
T  29508817 tctatgtcacccaagt 29508832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 24116021 - 24115914
Alignment:
Q  89 tcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcaca 188  Q
    ||||||| |||||| ||||||||||||||||| | |||||||| | ||||| ||||||||||||| ||||||||||||||| || ||||||||| |||||    
T  24116021 tcaatcacaatgtcgcaatgcttgtgaaagagtgtgaaacacaggcattgtaacattgtgattggccaatgttaccaatgtgactcaactctatctcaca 24115922  T
Q  189 caagtgct 196  Q
    ||||||||    
T  24115921 caagtgct 24115914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 6722051 - 6721965
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaa 176  Q
    |||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||    
T  6722051 caatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatgtcaccaatgtcatccaa 6721965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 38933698 - 38933617
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  38933698 gtgacgttggccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgt 38933617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 14229380 - 14229487
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||          ||||||||| ||||||    
T  14229380 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattg----------ccaatgtcatccaact 14229469  T
Q  179 ctatgtcacacaagtgct 196  Q
    ||||||||| ||||||||    
T  14229470 ctatgtcacccaagtgct 14229487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 2828703 - 2828587
Alignment:
Q  71 agagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtc 170  Q
    ||||||| ||||| |||  |||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||         ||||||||    
T  2828703 agagttgggtgacattggccaatcacaatgtcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgattgg---------ccaatgtc 2828613  T
Q  171 acccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||| |||||||    
T  2828612 acccaactctatgtcacagaagtgct 2828587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 2894086 - 2893968
Alignment:
Q  67 acatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaa 166  Q
    |||||||||||  |||| ||| ||||||| | ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||         ||||    
T  2894086 acatagagttggatgacattggtcaatcacagtgtcacaatgcttgtgaaagagagagaaatacaagcattgtgagattgtgattgg---------ccaa 2893996  T
Q  167 tgtcacccaactctatgtcacacaagtg 194  Q
    ||||||||||||||||||||| ||||||    
T  2893995 tgtcacccaactctatgtcacccaagtg 2893968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 14470619 - 14470733
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaact 178  Q
    ||||| |||| |||||| |||||  |||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||| ||| |||| |    
T  14470619 gtgacattgaccaatcacaatgttgcaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggctaatgttaccaatatcatccaa-t 14470717  T
Q  179 ctatgtcacacaagtg 194  Q
     ||| |||||||||||    
T  14470718 ttatatcacacaagtg 14470733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 37762019 - 37762101
Alignment:
Q  70 tagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattg 152  Q
    |||||||||||||| |||| |||||| |||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  37762019 tagagttgagtgacattgaccaatcacaatgtcgcaatgcttgtgaaagagaaagaaacacaagcattgtgatattgtgattg 37762101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 9172987 - 9173116
Alignment:
Q  58 acttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaa 157  Q
    ||||| || ||||||||||| ||||| ||| |  |||| |||| || ||||||| | ||||| ||||||| ||||| |||||| |||||||||||| |||    
T  9172987 acttgggtgacatagagttgggtgacattggttcatcagaatgccataatgcttataaaagaaagagaaatacaagcattgtggcattgtgattggccaa 9173086  T
Q  158 tgttaccaatgtcacccaactctatgtcac 187  Q
    | | ||||||||||||||||||||||||||    
T  9173087 tatcaccaatgtcacccaactctatgtcac 9173116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 14470654 - 14470586
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14470654 cacaagcattgcaacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacacaagtgct 14470586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 16514500 - 16514568
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||    
T  16514500 cacaagcattgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagtgct 16514568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 14464553 - 14464622
Alignment:
Q  50 tggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaaga 119  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||    
T  14464553 tggatagcacttgtgtgacatagagttgagtgacattggtcaatcacaatgtcacaatacttgtgaaaga 14464622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 6217262 - 6217356
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| |||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||         ||||||||||||||||||||||||| |    
T  6217262 caatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattgg---------ccaatgtcacccaactctatgtcaccc 6217352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 37961817 - 37961736
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    ||||| |||| |||||| |||| |||||||||||||||||||||||||||||||  ||| || ||||||||| |||||||||    
T  37961817 gtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattatggcattgtgatcggtcaatgt 37961736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 6217286 - 6217222
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaag 192  Q
    |||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||| ||||    
T  6217286 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaag 6217222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 38933663 - 38933731
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||||||||| ||||||| ||| || |||||||||||||||||||||||||| ||||||||    
T  38933663 cacaagcattgtgacattatgattggccaacgtcaccaatgtcacccaactctatgtcacccaagtgct 38933731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 8534239 - 8534140
Alignment:
Q  97 aatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||||||| ||||||||| |||||||||||||| |||| | ||||||| |||| ||||||| | ||||||||| ||||| || || |||||| ||||    
T  8534239 aatgtcacaattcttgtgaaatagagagaaacacaaatatttttacattgtaattgatcaatgtcatcaatgtcactcaactttacgttacacaattgct 8534140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 29925615 - 29925678
Alignment:
Q  97 aatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    ||||||| ||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||    
T  29925615 aatgtcagaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgt 29925678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 45213892 - 45213942
Alignment:
Q  144 ttgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  45213892 ttgtgattggtcaatgtcatcaatgtcacccaactctatgtcacacaagtg 45213942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 14892339 - 14892404
Alignment:
Q  131 aagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||||| |||||||||||| ||||||| |||||||||| ||||||||||||||| ||| ||||    
T  14892339 aagtattgtaacattgtgattgatcaatgtcaccaatgtcatccaactctatgtcacccaaatgct 14892404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 29508753 - 29508693
Alignment:
Q  128 cacaagtattgtgacatt-gtgattggtcaatgttaccaatgtcacccaactctatgtcac 187  Q
    |||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  29508753 cacaagcattgtggcatttgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 29508693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 14229415 - 14229356
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 187  Q
    |||||| ||||||||||||||||||  |||||| |||||||||||| |||||||||||||    
T  14229415 cacaagcattgtgacattgtgattgaccaatgtcaccaatgtcaccgaactctatgtcac 14229356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 33018621 - 33018679
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtca 186  Q
    |||||| ||||||||||||||||||  |||| | |||||||||||||||||||||||||    
T  33018621 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 33018679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 37961782 - 37961848
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||| |||||| ||||||||||||||||||| || ||| |||| |||||||||||||| ||||||    
T  37961782 cacaagcattgtggcattgtgattggtcaatgtcacaaatatcactcaactctatgtcacccaagtg 37961848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 6722034 - 6722095
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||||||||||||||| |||| | || ||||||| ||||||||||||||| ||||||||    
T  6722034 attgtgacattgtgattggccaatatcactaatgtcaaccaactctatgtcacccaagtgct 6722095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 32545871 - 32545932
Alignment:
Q  135 attgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||||||| ||||||| |||||| |||||||||||  ||||||||||||| ||||||||    
T  32545871 attgtgacattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaagtgct 32545932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 2144002 - 2143948
Alignment:
Q  60 ttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    |||||| |||||||||||||||||||||  |||||| ||||||| ||||||||||    
T  2144002 ttgtgtgacatagagttgagtgacgttggccaatcacaatgtcataatgcttgtg 2143948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 14892371 - 14892298
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattgg 153  Q
    ||||| ||||||||||| ||||| ||||| ||| ||||||||||||||| ||||  | |||||||||||||||||    
T  14892371 gtgacattgatcaatcacaatgttacaatacttatgaaagagagagaaagacaaaca-tgtgacattgtgattgg 14892298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 24115996 - 24116062
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 194  Q
    |||||| |||| |||||||||||||  |||| | || |||| |||||||||||||||||||||||||    
T  24115996 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 24116062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 14464617 - 14464558
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||||||||||         ||||||||||| |||||||||||||||||||||||    
T  14464617 cacaagtattgtgacattgtgattg---------accaatgtcactcaactctatgtcacacaagtgct 14464558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 1945461 - 1945530
Alignment:
Q  107 tgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaa 176  Q
    ||||||||||||||||| ||||  ||| ||||| | |||||||||||| ||||| || ||| ||||||||    
T  1945461 tgcttgtgaaagagagaaaaacttaagcattgtaatattgtgattggttaatgtcactaatatcacccaa 1945530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 2828586 - 2828646
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    |||||||| ||| ||||||||||| ||||| |||  |||||| ||||||| ||||||||||    
T  2828586 tagcacttctgtgacatagagttgggtgacattggccaatcacaatgtcaaaatgcttgtg 2828646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 551181 - 551300
Alignment:
Q  68 catagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaat 167  Q
    |||||||||| ||||| ||| ||||||| |||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||| ||||||    
T  551181 catagagttgggtgacattggtcaatcacaatgccacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaat 551280  T
Q  168 gtcacccaactctatgtcac 187  Q
     ||| |||| ||||||||||    
T  551281 atcatccaattctatgtcac 551300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 24587554 - 24587455
Alignment:
Q  97 aatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||||||||||||||||||||| || |||||||||||| ||||||||||||||||||  |||||| || |||||||||||||||||||||||  |||||||    
T  24587554 aatgtcacaatgcttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcactaatgtcacccaactctatgtcacctaagtgct 24587455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 17751000 - 17750897
Alignment:
Q  92 atcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaa 191  Q
    |||| ||||||||||||||||||||||||||| ||| ||||  ||||||||||||||||||  |||||| ||||||||||  ||||||||||||||||||    
T  17751000 atcacaatgtcacaatgcttgtgaaagagagataaatacaaacattgtgacattgtgattgaccaatgtcaccaatgtca-tcaactctatgtcacacaa 17750902  T
Q  192 gtgct 196  Q
    |||||    
T  17750901 gtgct 17750897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 24618628 - 24618706
Alignment:
Q  79 gtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaa 157  Q
    ||||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  24618628 gtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcattgtgacattgtgattggtcaa 24618706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 10521848 - 10521949
Alignment:
Q  51 ggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgat 150  Q
    |||||||||||| || ||||||||||  ||||| |||  |||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  10521848 ggatagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatgacattgtgat 10521947  T
Q  151 tg 152  Q
    ||    
T  10521948 tg 10521949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 12343200 - 12343106
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||         || ||||||||||||||||||||||| |    
T  12343200 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattg---------actaatgtcacccaactctatgtcaccc 12343110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 24618741 - 24618595
Alignment:
Q  50 tggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtga 149  Q
    ||||||||||||| || ||||||||||| |||||||||| |||||| ||||||||||||||||||             || ||| ||| |||||||||||    
T  24618741 tggatagcacttgggtgacatagagttgggtgacgttgaccaatcacaatgtcacaatgcttgtgtttctctctctttcataagcattatgacattgtga 24618642  T
Q  150 ttggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    ||| ||||||| |||||||||||||||||||||||||| ||||||||    
T  24618641 ttgatcaatgtcaccaatgtcacccaactctatgtcactcaagtgct 24618595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 17750978 - 17751046
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||| || |||||| | |||| ||||||||||||||||||||||||||||    
T  17750978 cacaagcattgtgacattgtgatcggccaatgtcatcaatatcacccaactctatgtcacacaagtgct 17751046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 13043556 - 13043502
Alignment:
Q  91 aatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacatt 145  Q
    ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  13043556 aatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattgtgacatt 13043502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 31654385 - 31654335
Alignment:
Q  110 ttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  31654385 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgt 31654335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 2315303 - 2315439
Alignment:
Q  51 ggatagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgat 150  Q
    |||||||| |||||| |||   ||||| ||||| ||||||||||| |||||||||||| ||||||||||||| |||||| ||| ||| ||  ||||||||    
T  2315303 ggatagcatttgtgtgacaataagttgggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagagcgaaacataagcattatggtattgtgat 2315402  T
Q  151 tggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |  |||||||         |||| ||||||||||||||||||||||    
T  2315403 tattcaatgt---------cacctaactctatgtcacacaagtgct 2315439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 12343176 - 12343232
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgt 184  Q
    |||||| ||||||||||||||||||| |||||| |||||| ||||||||||||||||    
T  12343176 cacaagcattgtgacattgtgattggccaatgtcaccaatctcacccaactctatgt 12343232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 24975814 - 24975749
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||||| |||||| |||||||||||  |||||| |||||||||| ||||||||||||||| |||||    
T  24975814 cacaagcattgtggcattgtgattgaccaatgtcaccaatgtcagccaactctatgtcacccaagt 24975749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 7384539 - 7384482
Alignment:
Q  139 tgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||||||||||||||||||| || ||||||| |||||||||| ||||  |||||||    
T  7384539 tgacattgtgattggtcaatgtcactaatgtcatccaactctatatcacctaagtgct 7384482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 13043533 - 13043601
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| ||||||| ||||||||| | |||||| |||||| |||| |||||||||||||| ||| ||||    
T  13043533 cacaagcattgtgatattgtgattagccaatgtcaccaatatcactcaactctatgtcacccaaatgct 13043601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 10521972 - 10521925
Alignment:
Q  67 acatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    ||||||||||||||||| ||| ||||||| ||||||| ||||||||||    
T  10521972 acatagagttgagtgacattggtcaatcacaatgtcataatgcttgtg 10521925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 2913881 - 2913848
Alignment:
Q  136 ttgtgacattgtgattggtcaatgttaccaatgt 169  Q
    ||||||||||||||||||||||||||||| ||||    
T  2913881 ttgtgacattgtgattggtcaatgttacctatgt 2913848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 6299208 - 6299168
Alignment:
Q  157 atgttaccaatgtcacccaactc-tatgtcacacaagtgct 196  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  6299208 atgtcaccaatgtcacccaactcttatgtcacacaagtgct 6299168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 6306018 - 6305978
Alignment:
Q  157 atgttaccaatgtcacccaactc-tatgtcacacaagtgct 196  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  6306018 atgtcaccaatgtcacccaactcttatgtcacacaagtgct 6305978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 31654307 - 31654367
Alignment:
Q  54 tagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtg 114  Q
    ||||||||| || | ||||||||| ||||| |||  |||||| ||||||||||||||||||    
T  31654307 tagcacttgggtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttgtg 31654367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 27258 - 27361
Alignment:
Q  90 caatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 189  Q
    |||||| ||||||| ||| ||||||||||||||||||||| ||| |||||| |||||||||||| |||| | ||||||||||||||||||||| |||| |    
T  27258 caatcacaatgtcataattcttgtgaaagagagagaaacagaagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatatcaccc 27357  T
Q  190 aagt 193  Q
    ||||    
T  27358 aagt 27361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 27282 - 27217
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 193  Q
    |||||| ||| ||||||||||||||| |||| | || ||||||||||||||||||||||| |||||    
T  27282 cacaagaattatgacattgtgattggccaatatcactaatgtcacccaactctatgtcacccaagt 27217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 2350 - 2265
Alignment:
Q  53 atagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattg 138  Q
    ||||||||||||| ||||||| ||| | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  2350 atagcacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 2350 - 2265
Alignment:
Q  53 atagcacttgtgttacatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattg 138  Q
    ||||||||||||| ||||||| ||| | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  2350 atagcacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 63878 - 63763
Alignment:
Q  69 atagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgttaccaatg 168  Q
    ||||||||| ||||| |||  |||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||         ||||||    
T  63878 atagagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattgg---------ccaatg 63788  T
Q  169 tcacccaactctatgtcacacaagt 193  Q
    ||||||||||||||||||| |||||    
T  63787 tcacccaactctatgtcacccaagt 63763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 49765 - 49697
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||    
T  49765 cacaagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagtgct 49697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 49731 - 49811
Alignment:
Q  80 tgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaagtattgtgacattgtgattggtcaatgt 160  Q
    |||| |||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||    
T  49731 tgacattgaccaatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcattgtggcattgtgattggccaatgt 49811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 19184 - 19116
Alignment:
Q  128 cacaagtattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtgct 196  Q
    |||||| |||||||||||||||||| ||||| | | |||||||||||||||||||||||||||| ||||    
T  19184 cacaagcattgtgacattgtgattgatcaatatcatcaatgtcacccaactctatgtcacacaaatgct 19116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 19155 - 19202
Alignment:
Q  85 ttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaa 132  Q
    ||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  19155 ttgatcaatcacaatgtcacaatgcttgtggaagaaagagaaacacaa 19202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 2902 - 2967
Alignment:
Q  67 acatagagttgagtgacgttgatcaatcaaaatgtcacaatgcttgtgaaagagagagaaacacaa 132  Q
    ||||||||||| ||||  |||| |||||| |||||||||||| |||||||||||||||||||||||    
T  2902 acatagagttgggtgatattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaa 2967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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