View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16399_high_6 (Length: 556)
Name: NF16399_high_6
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16399_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 547
Target Start/End: Original strand, 10894338 - 10894864
Alignment:
| Q |
17 |
agttgtaagggctattgactaatttcttaatatgatttaagttgtttactatatgagtcattacatttc-aacaaaaataataaatttagttgtttattg |
115 |
Q |
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| T |
10894338 |
agttgtaagggctattgactaatttcttaatatgatttaagttgtttactatatgagtcattacatttccaacaaaaataataaatttagttgtttattg |
10894437 |
T |
|
| Q |
116 |
agactgccacttggtcatttttgagaaaaaatagtttgcagagttaatttgtgttgtatgttatgaccttttttaggtttgtttatcagtagtgctatta |
215 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10894438 |
agactaccacttggtcatttttgagaaaaaatagtttgcagagttaatttgtgttgtatgttatgaccttttttaggtttgtttatcaatagtgctatta |
10894537 |
T |
|
| Q |
216 |
tacaataataaatttgcctttttagttggtgtaaatttccaacttagacttttgttcaaactccgtcgttatgcacaaatgaaacaattctaatatgact |
315 |
Q |
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| T |
10894538 |
tacaataataaatttgcctttttagttgttgtaaattttcaacttagacttttgttcaaactccgtcgttatgcacaaatgaaacaattctaatatgact |
10894637 |
T |
|
| Q |
316 |
aagagaaggcgaatccannnnnnnnnnnnnnngtattagaggcaaaagtattatagtttataacttgttcatnnnnnnnnnnnngcaaggcattgttttc |
415 |
Q |
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| T |
10894638 |
aagagaaggtgaatcca-----ttttttttttgtattagaggcaaaaatattatagtttataacttgttcataaaaaaaaaaaagcaaggcattgttttt |
10894732 |
T |
|
| Q |
416 |
ttttgaaaatatgatatcttttgtatattttttcttgtcaagtagtctagtggttggactcacctatcttaagtgtggagaagtggagaattcggactat |
515 |
Q |
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| T |
10894733 |
ttttgaaaatatgagatcttttgtatattttttcttgttaagtagtctaatggttggactcacctatcttaagtgtggagaagtggagaattcggactat |
10894832 |
T |
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| Q |
516 |
aaacctcgatccctacatattattgcctttgc |
547 |
Q |
| |
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| T |
10894833 |
aaatctcgatccctgtatattattgtctttgc |
10894864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 35113382 - 35113440
Alignment:
| Q |
51 |
atttaagttgtttactatatgagtcattacatttcaacaaaaataataaatttagttgt |
109 |
Q |
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|||||||||||||||| | | || ||| ||| |||||||||||||||||||||||||| |
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| T |
35113382 |
atttaagttgtttactttttacgtaattccatctcaacaaaaataataaatttagttgt |
35113440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 506
Target Start/End: Original strand, 43405981 - 43406046
Alignment:
| Q |
441 |
tattttttcttgtcaagtagtctagtggttggactcacctatcttaagtgtggagaagtggagaat |
506 |
Q |
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| T |
43405981 |
tatttttttttgtcaattagtctagtggttagactcacacacattatgtgtggagaagtggagaat |
43406046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 11315888 - 11315839
Alignment:
| Q |
95 |
aataaatttagttgtttattgagactgccacttggtcatttttgagaaaa |
144 |
Q |
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| T |
11315888 |
aataaatttagttgtttattgagattggagcttggtcaattttgagaaaa |
11315839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 511
Target Start/End: Original strand, 31068872 - 31068940
Alignment:
| Q |
443 |
ttttttcttgtcaagtagtctagtggttggactcacctatcttaagtgtggagaagtggagaattcgga |
511 |
Q |
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|||||| ||||||| ||||||||||||| || |||| | |||||||||||||||||| |||| |||| |
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| T |
31068872 |
tttttttttgtcaaatagtctagtggttagattcacacacattaagtgtggagaagtggggaatccgga |
31068940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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