View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16399_low_13 (Length: 358)

Name: NF16399_low_13
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16399_low_13
NF16399_low_13
[»] chr1 (11 HSPs)
chr1 (13-342)||(13086549-13086878)
chr1 (146-342)||(12963341-12963537)
chr1 (160-342)||(13272175-13272357)
chr1 (120-275)||(19278665-19278817)
chr1 (169-273)||(13080385-13080489)
chr1 (146-342)||(13243975-13244171)
chr1 (165-218)||(30367668-30367721)
chr1 (165-243)||(13094975-13095053)
chr1 (165-243)||(13130404-13130482)
chr1 (165-243)||(13162097-13162175)
chr1 (166-231)||(13064766-13064831)
[»] chr6 (1 HSPs)
chr6 (165-218)||(31396239-31396292)


Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 13086549 - 13086878
Alignment:
Q  13 aatatacttatcaatttcaaccattgcctcatttcccaagccttccttcattagtgcctttagcaagtaaaaatggctttcatcaaaatcttcaccgttt 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13086549 aatatacttatcaatttcaaccatttcctcatttcccaagccttccttcatcagtgcctttagcaagtaaaaatggctttcatcaaaatcttcaccgttt 13086648  T
Q  113 cgcaatcttcttctctcttcatcacctttggaataataagttatacatttggacaagaattggtgaagattttcttgagctaccttgtacttcttctctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13086649 cgcaatcttcttctctcttcatcacctttggaataataagttatacatttggacaagaattggtgaagattttcttgagctaccttgtacttcttctctt 13086748  T
Q  213 gaccaatttgtagccatttttgtaacttccaaaagtattttggaatatagtgcctagacaatattgtatcctcaataatcgaaatagcttttacatgagc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13086749 gaccaatttgtagccatttttgtaacttccaaaagtattttggaatatagtgcctagacaatattgtatcctcaataatcgaaatagcttttacatgagc 13086848  T
Q  313 aatctctggtaattcattgaacttgtaagg 342  Q
    ||||||||||||||||||||||||||||||    
T  13086849 aatctctggtaattcattgaacttgtaagg 13086878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 146 - 342
Target Start/End: Complemental strand, 12963537 - 12963341
Alignment:
Q  146 taataagttatacatttggacaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttccaaa 245  Q
    ||||||| |||||| ||| |||||||||  |||| ||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  12963537 taataagatatacaattgtacaagaatttatgaatattttcttgagctatattgttcttcttctcttgaccaatttgtagccatttttgtagcttccaaa 12963438  T
Q  246 agtattttggaatatagtgcctagacaatattgtatcctcaataatcgaaatagcttttacatgagcaatctctggtaattcattgaacttgtaagg 342  Q
    |  |||||||||||||||||||| ||||||| ||||||||||| |  ||||||||||||||||  ||||| ||||  || |||||||||||||||||    
T  12963437 aacattttggaatatagtgcctaaacaatatcgtatcctcaatcacagaaatagcttttacatacgcaatatctgaaaactcattgaacttgtaagg 12963341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 342
Target Start/End: Original strand, 13272175 - 13272357
Alignment:
Q  160 tttggacaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttccaaaagtattttggaata 259  Q
    |||| |||||||||| |||| ||||| ||||||||   ||| |||||||||||||||||| ||||||||||| |||| ||||||||   ||||||||| |    
T  13272175 tttgaacaagaattgatgaatatttttttgagctatactgttcttcttctcttgaccaatatgtagccatttctgtagcttccaaacacattttggaaca 13272274  T
Q  260 tagtgcctagacaatattgtatcctcaataatcgaaatagcttttacatgagcaatctctggtaattcattgaacttgtaagg 342  Q
     ||||||||  ||||| |||||||||||| |  |||||||||||||||| |||||| ||| | |  |||||||||||||||||    
T  13272275 gagtgcctatgcaataatgtatcctcaatcacagaaatagcttttacataagcaatttctcgaagctcattgaacttgtaagg 13272357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 120 - 275
Target Start/End: Complemental strand, 19278817 - 19278665
Alignment:
Q  120 ttcttctctcttcatcacctttggaataataagttatacatttggacaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaat 219  Q
    ||||| |||||||||||||||||   ||||||| ||||||||||  |||||||| |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  19278817 ttcttttctcttcatcacctttg---taataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttcttctcttgaccaat 19278721  T
Q  220 ttgtagccatttttgtaacttccaaaagtattttggaatatagtgcctagacaata 275  Q
     |||||||| ||||| | ||||||||   ||||||| |||||||| ||| ||||||    
T  19278720 gtgtagccacttttgcagcttccaaatacattttggcatatagtgtctatacaata 19278665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 13080489 - 13080385
Alignment:
Q  169 gaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttccaaaagtattttggaatatagtgccta 268  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||   |||||||||||||||||||     
T  13080489 gaattgatgaagattttcttttgctaccttgtacttcttctcttgaccaatctgtaaccatttttgtagcttccaaatacattttggaatatagtgcctc 13080390  T
Q  269 gacaa 273  Q
    |||||    
T  13080389 gacaa 13080385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 342
Target Start/End: Complemental strand, 13244171 - 13243975
Alignment:
Q  146 taataagttatacatttggacaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttccaaa 245  Q
    |||| ||||||||||||   ||||||||||||||||||||||  |||| |||||  |||||||||| |||||||||||||||| ||||||| ||||||||    
T  13244171 taatcagttatacatttctccaagaattggtgaagattttctctagctgccttgcccttcttctctagaccaatttgtagccacttttgtagcttccaaa 13244072  T
Q  246 agtattttggaatatagtgcctagacaatattgtatcctcaa-taatcgaaatagcttttacatgagcaatctctggtaattcattgaacttgtaagg 342  Q
       |||| ||||||||||| |||  |||||   ||||||||| ||  | ||| ||||||| ||| |||||| |||| ||| |||||| ||||||||||    
T  13244071 tacatttcggaatatagtgtctacgcaataccatatcctcaagtacactaaa-agctttttcataagcaatatctgataactcattgcacttgtaagg 13243975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 30367721 - 30367668
Alignment:
Q  165 acaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaa 218  Q
    |||||||| ||| ||||||||||| |||||||||||||||||| ||||||||||    
T  30367721 acaagaatcggtcaagattttcttcagctaccttgtacttcttttcttgaccaa 30367668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 13094975 - 13095053
Alignment:
Q  165 acaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttcca 243  Q
    |||||||| ||| ||||| |||||| || |||||| ||||||||||||||||||  |  ||||||||||| ||||||||    
T  13094975 acaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttcca 13095053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 13130404 - 13130482
Alignment:
Q  165 acaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttcca 243  Q
    |||||||| ||| ||||| |||||| || |||||| ||||||||||||||||||  |  ||||||||||| ||||||||    
T  13130404 acaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttcca 13130482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 13162097 - 13162175
Alignment:
Q  165 acaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccatttttgtaacttcca 243  Q
    |||||||| ||| ||||| |||||| || |||||| ||||||||||||||||||  |  ||||||||||| ||||||||    
T  13162097 acaagaatcggtcaagatattcttgggcaaccttgaacttcttctcttgaccaacattgagccatttttgcaacttcca 13162175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 13064831 - 13064766
Alignment:
Q  166 caagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaatttgtagccattt 231  Q
    |||||||| || |||| ||||||||||||| |||   |||||||||||||||||||| ||||||||    
T  13064831 caagaatttgtcaagactttcttgagctactttgagtttcttctcttgaccaatttggagccattt 13064766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 31396292 - 31396239
Alignment:
Q  165 acaagaattggtgaagattttcttgagctaccttgtacttcttctcttgaccaa 218  Q
    |||||||| ||| |||||||||||| ||||||| |||| |||| ||||||||||    
T  31396292 acaagaatcggttaagattttcttgggctacctcgtacctcttttcttgaccaa 31396239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University