View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16399_low_15 (Length: 315)
Name: NF16399_low_15
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16399_low_15 |
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| [»] scaffold0026 (2 HSPs) |
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Alignment Details
Target: scaffold0026 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 101119 - 101399
Alignment:
| Q |
16 |
atgaaaaatgcatgggcagaagctcatgatcagctggccaatgccatcaaagctgaaatgaaagaagctcatgatcaactggacagtgccaatttgataa |
115 |
Q |
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| T |
101119 |
atgaaaaatgcatgggcagaagctcatgatcggctggccaatgccatcaaagctgaaatgaaagaagctcatgatcaactggacagtgccaatttgataa |
101218 |
T |
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| Q |
116 |
gtaattttaaattttaaatataattgaatttcctaattcattttcctgcaacttaattgatcagggagagcgtgtgtgggagcaactacgtaccaatggt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | |
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| T |
101219 |
gtaattttaaattttaaatataattgaatttcctaattcattttcctgcaacttaattgataagggagagcgtgtgtgggagcaacaacgtaccaatgat |
101318 |
T |
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| Q |
216 |
tcatgagcatcatcttcaatttcttttaaggcattcagaatataagtccatctctaatatatccaacttttataatagacg |
296 |
Q |
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| T |
101319 |
tcatgagtatcatcttcaatttcttttaaggcattcagaatataagtccatctctaatatatccaacttttataatagacg |
101399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 103266 - 103330
Alignment:
| Q |
20 |
aaaatgcatgggcagaagctcatgatcagctggccaatgccatcaaagctgaaatgaaagaagct |
84 |
Q |
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|||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| ||||| |
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| T |
103266 |
aaaatgcatggggagaagctcatgatcaactcgccaatgccatcaaagctgaaatgaaaaaagct |
103330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 25849298 - 25849161
Alignment:
| Q |
16 |
atgaaaaatgcatgggcagaagctcatgatcagctggccaatgccatcaaagctgaaatgaaagaagctcatgatcaactggacagtgccaatttgataa |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
25849298 |
atgaaaaatgcatgggcagaagctcatgatcagcttgccaatgccatcaaagttgaaatgaaagaagctcatgatcagatggacaatgccaatttgataa |
25849199 |
T |
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| Q |
116 |
gtaattttaaattttaaatataattgaatttcctaatt |
153 |
Q |
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| T |
25849198 |
gtaattttaaattttaaatataattgaatgttctaatt |
25849161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 25847236 - 25847178
Alignment:
| Q |
20 |
aaaatgcatgggcagaagctcatgatcagctggccaatgccatcaaagctgaaatgaaa |
78 |
Q |
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|||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
25847236 |
aaaatgcatggggagaagcccatgatcaactggccaatgccatcaaagctgaaatgaaa |
25847178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 25844980 - 25844918
Alignment:
| Q |
16 |
atgaaaaatgcatgggcagaagctcatgatcagctggccaatgccatcaaagctgaaatgaaa |
78 |
Q |
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||||| |||||||||| ||||||| |||||||| ||| |||||| |||||| ||||||||||| |
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| T |
25844980 |
atgaagaatgcatggggagaagcttatgatcagttggtcaatgcaatcaaatctgaaatgaaa |
25844918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 25849033 - 25848980
Alignment:
| Q |
240 |
tttaaggcattcagaatataagtccatctctaatatatccaacttttataatag |
293 |
Q |
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||||||||||| ||||||||||||||||||| | |||||||||||||| |||| |
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| T |
25849033 |
tttaaggcattaagaatataagtccatctctggtgtatccaacttttattatag |
25848980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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