View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16399_low_18 (Length: 253)
Name: NF16399_low_18
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16399_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 26612866 - 26612657
Alignment:
| Q |
18 |
gaattcgaacacaaaacacctcagaactgaattcaaacacaaaacttctttttatactaaaaagatcttttacgatcttatctaagtgttcttatgtcca |
117 |
Q |
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| T |
26612866 |
gaattcaaacacaaaacacttcaggactgaattcaaacacaa--cttctttttatactgaaaagatcttttacgatcttatctaagtgttcttgtgtcta |
26612769 |
T |
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| Q |
118 |
aatgtgtaaatatggatgaatgtgatttttatgaaatcattagggagggggttaaaaatagctctcttagaaaattacgtagtaaggtgacgaataacta |
217 |
Q |
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| T |
26612768 |
gatgtgtaaatatggatgaatgtgatttttatgaaatcattagggagggggttaaaaatagctctcttagaaaattaggtagtaaggtgacgaatgacta |
26612669 |
T |
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| Q |
218 |
ccatttattaac |
229 |
Q |
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|||||||||||| |
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| T |
26612668 |
ccatttattaac |
26612657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 26635436 - 26635259
Alignment:
| Q |
18 |
gaattcgaacacaaaacacctcagaactgaattcaaacacaaaacttctttttatactaaaaagatcttttacgatcttatctaagtgttcttatgtcca |
117 |
Q |
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|||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| | |
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| T |
26635436 |
gaattcgaacacaaaacacctcagaattaaattcgaacacaaaacttctttttatactgaaaagatcttttacgatcttatctaagtattcttgggtcaa |
26635337 |
T |
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| Q |
118 |
aatgtgtaaatatggatgaatgtgatttttatgaaatcattagggagggggttaaaaatagctctcttagaaaattac |
195 |
Q |
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| T |
26635336 |
gatgtgtaaatatggatgaatgtgatttttatgatatcattagggagggggttaaaaatagctctcttaaaaaattac |
26635259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 45 - 240
Target Start/End: Complemental strand, 26628020 - 26627825
Alignment:
| Q |
45 |
tgaattcaaacacaaaacttctttttatactaaaaagatcttttacgatcttatctaagtgttcttatgtccaaatgtgtaaatatggatgaatgtgatt |
144 |
Q |
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||||||| ||||||||||||||| ||||||| |||||||||| | ||| |||||||||||||||| ||| | ||| |||||||||||||||| | ||| |
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| T |
26628020 |
tgaattcgaacacaaaacttcttcttatactgaaaagatcttaaatgattttatctaagtgttcttgggtctagatgcgtaaatatggatgaatattatt |
26627921 |
T |
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| Q |
145 |
tttatgaaatcattagggagggggttaaaaatagctctcttagaaaattacgtagtaaggtgacgaataactaccatttattaacaaacacatttt |
240 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| ||||||| || | ||||||| |||||||||||||| |
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| T |
26627920 |
tttatgaaatcattagggatggggttaaaaatagctctctcagaaaattaggtagtaaggggacgaatgacgatcatttataaacaaacacatttt |
26627825 |
T |
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