View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16399_low_23 (Length: 209)
Name: NF16399_low_23
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16399_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 26642825 - 26643000
Alignment:
| Q |
16 |
aattctgtagttttcgtcacttttagtttttgaaatttgaatttcttgtgtttggatgcttaattagcaattactgtttggtgaataggcatgtgaaaat |
115 |
Q |
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| T |
26642825 |
aattctgtagttttcgtcacttttagttt--gaaatttgaatttcttgtgtttggatgcttaattagcaattactgtttggtgaataggcatgtgaaaat |
26642922 |
T |
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| Q |
116 |
gcattgaggtgcattggaaacagcgatgttcaaaagcttggaagagacgtgatttctgataatttgaaggctaatact |
193 |
Q |
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| T |
26642923 |
gcattgaggtgcattggaaacagcgatgttcaaaagcttggaagagacgtgatttctgataatttgaaggctaatact |
26643000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 26656303 - 26656466
Alignment:
| Q |
27 |
tttcgtcacttttagtttttgaaatttgaatttctt--gtgtttggatgcttaattagcaattactgtttggtgaataggcatgtgaaaatgcattgagg |
124 |
Q |
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| T |
26656303 |
tttcgtcacttttagttt--gaattttgagtttgttttgtgtttgaatgcataattagtaattattgtttggtgaataggcatgtgaaaatgcattgagg |
26656400 |
T |
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| Q |
125 |
tgcattggaaacagcgatgttcaaaagcttggaagagacgtgatttctgataatttgaaggctaat |
190 |
Q |
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| T |
26656401 |
tgcattggaaataacaatgttcaaaagcttggaagagacgcgattcctgaaaatttgaaggctaat |
26656466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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