View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16399_low_4 (Length: 594)

Name: NF16399_low_4
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16399_low_4
NF16399_low_4
[»] chr3 (2 HSPs)
chr3 (14-577)||(21309996-21310548)
chr3 (275-389)||(47309977-47310091)
[»] chr5 (4 HSPs)
chr5 (14-252)||(31338335-31338561)
chr5 (166-280)||(31338564-31338678)
chr5 (341-451)||(42652822-42652932)
chr5 (168-277)||(42652589-42652698)
[»] chr4 (2 HSPs)
chr4 (278-457)||(50564412-50564591)
chr4 (168-277)||(50564734-50564843)
[»] chr1 (2 HSPs)
chr1 (286-389)||(45089241-45089344)
chr1 (168-281)||(45089000-45089113)
[»] chr6 (1 HSPs)
chr6 (79-256)||(4486323-4486495)


Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 14 - 577
Target Start/End: Original strand, 21309996 - 21310548
Alignment:
Q  14 atgaatgaaaaacaacaacgtaccaatccatctccattaaacgacgaatttgattaaccaacgctctctacccaagcgactatctgtcacacctttcttt 113  Q
    |||||||| ||||||||||||||||||||||||    ||||||||||||||| ||||||| ||||||  |||||||||||||||||||||||||||||||    
T  21309996 atgaatgagaaacaacaacgtaccaatccatct----taaacgacgaatttgtttaaccagcgctct--acccaagcgactatctgtcacacctttcttt 21310089  T
Q  114 atagtcttctacacactaacacaatctacattcaattctattctactgctgcatatcccatccttctcacatatctcagaccctccaacactccccaaat 213  Q
    |||||||||| |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21310090 atagtcttctccacactaacacaatctacattcaattc-----tactgctgcatatcccatccttctcacatatctcagaccctccaacactccccaaag 21310184  T
Q  214 ctccgccacaaatgcactgcactcgtcaatgaatttagcaaaaccaccaatccattctccatcattcttgcctgataataatcttctgatagcttcaaaa 313  Q
    |||||||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  21310185 ctccgccacaaacgcattgcactcgccaatgaatttagcaaaaccaccgatccattctccatcattcttgcttgataataatcttctgataacttaaaaa 21310284  T
Q  314 catgattcacaggattaattggtctaacaaaatcattttcatgcaactccttattcctccatgtccacaaacaatggcatgttattgcccaaataacttt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21310285 catgattcacaggattaattggtctaacaaaatcattttcatgcaactcctaattcctccatgtccacaaacaatggcatgttattgcccaaatatcttt 21310384  T
Q  414 cctatctctatcccctctccaaccagcatcatggcttaaattgatattaagacctttccacaacggcagcaccaatggacaatcccttaaagcatgtaaa 513  Q
    || |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21310385 ccaatctctatcccccctccaaccagcatcatggcttaaattgagattaagacctttccacaacggcagcaccaatggacaatcccttaaagcatgtaaa 21310484  T
Q  514 cttgtttcctccacgtcaccacaataagcacacatagaatggccaagacccatcctacttttct 577  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21310485 cttgtttcctccacgtcaccacaataagcacacatagaatggcaaagacccatcctacttttct 21310548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 275 - 389
Target Start/End: Complemental strand, 47310091 - 47309977
Alignment:
Q  275 tcattcttgcctgataataatcttctgatagcttcaaaacatgattcacaggattaattggtctaacaaaatcattttcatgcaactccttattcctcca 374  Q
    |||||||||| ||||  ||||||  ||| | ||| | ||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| |||||    
T  47310091 tcattcttgcttgattgtaatctaatgaaatctttagaacatgattcacatgattaattggtctaacaaaattatgttcatgcaactccttattgctcca 47309992  T
Q  375 tgtccacaaacaatg 389  Q
     ||||||||||||||    
T  47309991 cgtccacaaacaatg 47309977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 31338335 - 31338561
Alignment:
Q  14 atgaatgaaaaacaacaacgtaccaatccatctccattaaacgacgaatttgattaaccaacgctctctacccaagcgactatctgtcacacctttcttt 113  Q
    |||||||| |||||||||||| |||||||||||||| ||| |||||||||| |||||| ||||||||  |||||||||||||||||||||||||| ||||    
T  31338335 atgaatgagaaacaacaacgttccaatccatctccaataagcgacgaattttattaactaacgctct--acccaagcgactatctgtcacaccttccttt 31338432  T
Q  114 atagtcttctacacactaacacaatctacattcaattctattctactgctgcatatcccatccttctcacatatctcagaccctccaacactccccaaat 213  Q
    |||||||||| || ||||||| |||||||||||||||| |     |||||| ||||| |||||||||||||||| ||| |     ||  ||||||||||     
T  31338433 atagtcttctccaaactaacataatctacattcaattcaa-----ctgctgtatatctcatccttctcacatatttcaaa-----cagtactccccaaag 31338522  T
Q  214 ctccgccacaaatgcactgcactcgtcaatgaatttagc 252  Q
    |||||||| ||| ||| |||||||| |||||||||||||    
T  31338523 ctccgccaaaaacgcattgcactcgccaatgaatttagc 31338561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 31338564 - 31338678
Alignment:
Q  166 atatcccatccttctcacatatctcagaccctccaacactccccaaatctccgccacaaatgcactgcactcgtcaatgaatttagcaaaaccaccaatc 265  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  31338564 atatcccatccttctcacatatctcaaaccctcaaacactccccaaagctccaccacaaacgcattgcactcgccaatgaatttagcaaaaccaccaatc 31338663  T
Q  266 cattctccatcattc 280  Q
    |||||||||||||||    
T  31338664 cattctccatcattc 31338678  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 341 - 451
Target Start/End: Original strand, 42652822 - 42652932
Alignment:
Q  341 caaaatcattttcatgcaactccttattcctccatgtccacaaacaatggcatgttattgcccaaataactttcctatctctatcccctctccaaccagc 440  Q
    |||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||| |||||| || || || ||| |||||||||||    
T  42652822 caaaattattttcatgcaacccctttttcttccatgtccacaaacaatggcatgttgttgcccaaatatctttccaatatccattccccctccaaccagc 42652921  T
Q  441 atcatggctta 451  Q
    |||||| ||||    
T  42652922 atcatgactta 42652932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 42652589 - 42652698
Alignment:
Q  168 atcccatccttctcacatatctcagaccctccaacactccccaaatctccgccacaaatgcactgcactcgtcaatgaatttagcaaaaccaccaatcca 267  Q
    ||||||||||||||||||| || | |||||||||| ||||||||| ||| |||||||| ||| | || ||  ||||  ||||| ||||||||||||||||    
T  42652589 atcccatccttctcacatagcttaaaccctccaacgctccccaaagctcagccacaaacgcattacagtctccaatatatttaacaaaaccaccaatcca 42652688  T
Q  268 ttctccatca 277  Q
    ||||||||||    
T  42652689 ttctccatca 42652698  T

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Target: chr4 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 278 - 457
Target Start/End: Complemental strand, 50564591 - 50564412
Alignment:
Q  278 ttcttgcctgataataatcttctgatagcttcaaaacatgattcacaggattaattggtctaacaaaatcattttcatgcaactccttattcctccatgt 377  Q
    ||||||| |||||||||||||| |||||||||||||||||||||  ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||    
T  50564591 ttcttgcttgataataatcttccgatagcttcaaaacatgattcgaaggattagttggtctaacaaatttattttcatgcaactccttattcctccatgt 50564492  T
Q  378 ccacaaacaatggcatgttattgcccaaataactttcctatctctatcccctctccaaccagcatcatggcttaaattga 457  Q
    | ||||||||||||||||| | ||||||||| |||||| ||||| || |||  ||||||| |||||| | ||||| ||||    
T  50564491 cgacaaacaatggcatgttgtcgcccaaatatctttccaatctccattccccttccaaccggcatcaagacttaagttga 50564412  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 50564843 - 50564734
Alignment:
Q  168 atcccatccttctcacatatctcagaccctccaacactccccaaatctccgccacaaatgcactgcactcgtcaatgaatttagcaaaaccaccaatcca 267  Q
    |||||||||||||| |||| |||| ||||||||||||| | |||| |||  ||||||| ||||| || | | |||||||||||| |||||||||||||||    
T  50564843 atcccatccttctcgcatagctcaaaccctccaacactactcaaagctcaaccacaaacgcactacaattgccaatgaatttagtaaaaccaccaatcca 50564744  T
Q  268 ttctccatca 277  Q
    ||||||||||    
T  50564743 ttctccatca 50564734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 286 - 389
Target Start/End: Original strand, 45089241 - 45089344
Alignment:
Q  286 tgataataatcttctgatagcttcaaaacatgattcacaggattaattggtctaacaaaatcattttcatgcaactccttattcctccatgtccacaaac 385  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||||||  |||||||||||    |||||||||||||||||||||||| || || ||||    
T  45089241 tgataataatcttctgatagcttcaaatcatgattgacaagattaattcatctaacaaaattgcattcatgcaactccttattcctccacgttcataaac 45089340  T
Q  386 aatg 389  Q
    ||||    
T  45089341 aatg 45089344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 281
Target Start/End: Original strand, 45089000 - 45089113
Alignment:
Q  168 atcccatccttctcacatatctcagaccctccaacactccccaaat-ctccgccacaaatgcactgcactcgtcaatgaatttagcaaaaccaccaatcc 266  Q
    |||||||||| | |||||| |||| |||| ||||||||  |||||  ||| |||||||| ||||| || ||   ||||||||||||||||||  ||||||    
T  45089000 atcccatcct-cacacataactcaaaccccccaacactttccaaaagctcagccacaaacgcactacaatctcgaatgaatttagcaaaaccgtcaatcc 45089098  T
Q  267 attctccatcattct 281  Q
    |||||||||||||||    
T  45089099 attctccatcattct 45089113  T

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Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 79 - 256
Target Start/End: Original strand, 4486323 - 4486495
Alignment:
Q  79 ctctacccaagcgactatctgtcacacctttctttatagtcttctacacactaacacaatctacattcaattctattctactgctgcatatcccatcctt 178  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||| |||||||| | |||| |||||||     |||| ||||||  | |||||||||||    
T  4486323 ctctacccaaacgactatctgtcataccttcctttatagtcttcttcacactaatagaatccacattca-----attcaactgctctagatcccatcctt 4486417  T
Q  179 ctcacatatctcagaccctccaacactccccaaatctccgccacaaatgcactgcactcgtcaatgaatttagcaaaa 256  Q
    ||  ||||| ||  ||| | |||||||||||||| |||  ||||||| ||||| || ||| ||||||||||| |||||    
T  4486418 cttgcatatatcgaaccttgcaacactccccaaagctcttccacaaacgcactacaatcgccaatgaatttaacaaaa 4486495  T

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