View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16399_low_5 (Length: 590)

Name: NF16399_low_5
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16399_low_5
NF16399_low_5
[»] chr5 (4 HSPs)
chr5 (309-574)||(6606780-6607045)
chr5 (161-303)||(6606585-6606728)
chr5 (1-101)||(6606422-6606525)
chr5 (161-253)||(1433773-1433865)
[»] chr8 (2 HSPs)
chr8 (161-574)||(29685073-29685483)
chr8 (161-574)||(29688212-29688635)
[»] chr7 (1 HSPs)
chr7 (161-306)||(37647120-37647265)
[»] chr2 (2 HSPs)
chr2 (209-278)||(44039511-44039580)
chr2 (3-55)||(3082411-3082463)
[»] chr1 (4 HSPs)
chr1 (1-54)||(1380177-1380230)
chr1 (1-54)||(7313352-7313405)
chr1 (3-55)||(40909173-40909225)
chr1 (439-490)||(40887338-40887389)
[»] chr3 (1 HSPs)
chr3 (164-233)||(5256762-5256830)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 309 - 574
Target Start/End: Original strand, 6606780 - 6607045
Alignment:
Q  309 atatatagaaaactctaaaagcaaatataccgatgagtacacaacatattttcttgtcttcactaatgttatagaaagatttatgtatataaaaataaga 408  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6606780 atatatatataactctaaaagcaaatataccaatgagtacacaacatattttcttgtcttcactaatgttatagaaagatttatgtatataaaaataaga 6606879  T
Q  409 aaatcctaataaacacctttaggacattcattaagcaatcaaaagggataaattttgcttaaaaaataatgtaattattactaagtattttcaaaacaaa 508  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||||||||||    
T  6606880 aaatcctaataaacacctttaggacattctttaagcaatcaaaagggataacttttgcttaaaaaatagtgtaattattaccaaatattttcaaaacaaa 6606979  T
Q  509 aattatttttatgaaatccttaaataacacccttacatagaacacttgtttacatgatcatatata 574  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6606980 aattatttttatgaaatccttaaataacacccttaaatagaacacttgtttacatgatcatatata 6607045  T

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Target: chr5; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 161 - 303
Target Start/End: Original strand, 6606585 - 6606728
Alignment:
Q  161 tactttaattttgaagtcataaatatacatcataattctttcgaaaa-aatatatatttcataattgttctcttgtgattccgcgttcagttcttaataa 259  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6606585 tactttaattttgaagtcataattatacatcataattctttcgaaaaaaatatatatttcataattgttctcttgtgatttcgcgttcagttcttaataa 6606684  T
Q  260 tattcattgtgcagaaaacactttcaataattatagttgtcaca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6606685 tattcattgtgcagaaaacactttcaataattatagttgtcaca 6606728  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 6606422 - 6606525
Alignment:
Q  1 ggtaaatgtcaatgacataa---ggttgttgttctcttaaatattcttatattactgattcataaacatggacgaacccaaaaatctcgagtagtgaggg 97  Q
    ||||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  6606422 ggtaaatgtcaatgacataataagattgttgttctcttaaatattcttatattactgattcataaacatggacgaacccaaaagtcttgagtagtgaggg 6606521  T
Q  98 caat 101  Q
    ||||    
T  6606522 caat 6606525  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 1433865 - 1433773
Alignment:
Q  161 tactttaattttgaagtcataaatatacatcataattctttcgaaaaaatatatatttcataattgttctcttgtgattccgcgttcagttct 253  Q
    |||||||||||||||   ||||||  |||||||||||||||| ||||||  |||| |||||||||||||||||| |||| | ||||| |||||    
T  1433865 tactttaattttgaaaatataaattcacatcataattctttctaaaaaaattataattcataattgttctcttgcgatttcccgttcggttct 1433773  T

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Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 161 - 574
Target Start/End: Complemental strand, 29685483 - 29685073
Alignment:
Q  161 tactttaattttgaagtcataaatatacatcataattctttcgaaaaaatatatatttcataattgttctcttgtgattccgcgttcagttcttaataat 260  Q
    |||||||||||||||   |||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||    
T  29685483 tactttaattttgaaaatataaatatacatcataattctttccaaaaaa-atatacttcataattattctcttgtgattccgcgttcagtttttaataat 29685385  T
Q  261 attcattgtgcagaaaacactttcaataattatagttgtcacacacacatatatagaaaactctaaaagcaaatataccgatgagtacacaacatatttt 360  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||| ||| | | ||||||||||||||| ||||||| | ||||||  ||||||||||||    
T  29685384 attcattgtggagaaaactctttcaacaattatagttgtcacacatacacacacagaaaactctaaaaggaaatatatcaatgagtgaacaacatatttt 29685285  T
Q  361 cttgtcttcactaatgttatag-aaagat--ttatgtatataaaaataagaaaatcctaataaacacctttaggacattcattaagcaatcaaaagggat 457  Q
    ||||||| |||||||||||||| ||||||  ||||||| || ||||||||||||| |||| ||||||||||| || |||  |||| |||||||||| | |    
T  29685284 cttgtctccactaatgttatagaaaagattgttatgtacat-aaaataagaaaatactaacaaacacctttaagaaattttttaaacaatcaaaagtggt 29685186  T
Q  458 aaattttgcttaaaaaataatgtaattattactaagtattttcaaaacaaaaattatttttatgaaatccttaaataacacccttacatagaacacttgt 557  Q
    || |||||| || |   |  | ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    |||| |||||||    
T  29685185 aacttttgcatatatttttttttaaatattactaagtattttcaaaacaaaatttatttttatgaaatccttaaataacaccct----tagagcacttgt 29685090  T
Q  558 ttacatgatcatatata 574  Q
    |||||||| ||||||||    
T  29685089 ttacatgaccatatata 29685073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 161 - 574
Target Start/End: Complemental strand, 29688635 - 29688212
Alignment:
Q  161 tactttaattttgaagtcataaatatacatcataattctttcgaaaaaatata-tatttcataattgttctcttgtgattccgcgttcagttcttaataa 259  Q
    |||||||||||||||  ||||||| ||||||||||||||||| |||||| | | |||||||||||||||||||||  |||| || |||||||||||||||    
T  29688635 tactttaattttgaaaacataaatttacatcataattctttccaaaaaaaaaaatatttcataattgttctcttggcattctgcattcagttcttaataa 29688536  T
Q  260 tattcattgtgcagaaaacactttcaataattatagttgtcacacacac--------------------atatatagaaaactctaaaagcaaatatacc 339  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||||                    ||||||  | ||||||||||| ||||||| |    
T  29688535 tattcattgtggagaaaactctttcaacaattatagttgtcacacacacacacacatatatatatatatatatattaagaactctaaaaggaaatatatc 29688436  T
Q  340 gatgagtacacaacatattttcttgtcttcactaatgttatagaaagat--ttatgtatataaaaataagaaaatcctaataaacacctttaggacattc 437  Q
     ||||||  ||||||||||| ||||||| |||||| |||||||||| ||  |||||||||| ||||||||||||| |||| || |  ||||||||||||     
T  29688435 aatgagtgaacaacatatttccttgtctccactaacgttatagaaatattgttatgtatat-aaaataagaaaatgctaacaagcgtctttaggacattt 29688337  T
Q  438 attaagcaatcaaaag-gga---taaattttgcttaaaaaataatgtaattattactaagtattttcaaaacaaaaattatttttatgaaatccttaaat 533  Q
     |||||||||||| || |||   ||||||||  ||         ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29688336 tttaagcaatcaacagtggaaactaaatttt--tt---------tgtaa-tattactaagtattttcaaaacaaaatttatttttatgaaatccttaaat 29688249  T
Q  534 aacacccttacatagaacacttgtttacatgatcatatata 574  Q
    ||||||||    || ||||||||||||||||| ||||||||    
T  29688248 aacaccct----taaaacacttgtttacatgaccatatata 29688212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 161 - 306
Target Start/End: Original strand, 37647120 - 37647265
Alignment:
Q  161 tactttaattttgaagtcataaatatacatcataattctttcgaaaaaatatatatttcataattgttctcttgtgattccgcgttcagttcttaataat 260  Q
    |||||||||||||||  ||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||||  ||||||||||| ||||||||||||    
T  37647120 tactttaattttgaaaacataaatatacatcataattctttccataaaaaatatacttcataattgttctcttggaattccgcgttcggttcttaataat 37647219  T
Q  261 attcattgtgcagaaaacactttcaataattatagttgtcacacac 306  Q
    |||| | ||| ||||||| ||||||| |||||||||||||||||||    
T  37647220 attcgtcgtggagaaaactctttcaacaattatagttgtcacacac 37647265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 44039580 - 44039511
Alignment:
Q  209 atatatatttcataattgttctcttgtgattccgcgttcagttcttaataatattcattgtgcagaaaac 278  Q
    ||||||| |||||||||||||||||| |||| | ||||| |||||||||||||||||||||| |||||||    
T  44039580 atatataattcataattgttctcttgcgatttcacgttcggttcttaataatattcattgtggagaaaac 44039511  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 3082411 - 3082463
Alignment:
Q  3 taaatgtcaatgacataaggttgttgttctcttaaatattcttatattactga 55  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  3082411 taaatgtcaatgacataagattgttgttctcttgaatattcttttattactga 3082463  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1380177 - 1380230
Alignment:
Q  1 ggtaaatgtcaatgacataaggttgttgttctcttaaatattcttatattactg 54  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||    
T  1380177 ggtaaatgacaatgacgtaagattgttgttctcttaaatattcttatattactg 1380230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7313352 - 7313405
Alignment:
Q  1 ggtaaatgtcaatgacataaggttgttgttctcttaaatattcttatattactg 54  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||    
T  7313352 ggtaaatgacaatgacgtaagattgttgttctcttaaatattcttatattactg 7313405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 40909173 - 40909225
Alignment:
Q  3 taaatgtcaatgacataaggttgttgttctcttaaatattcttatattactga 55  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  40909173 taaatgtcaatgacataagattgttgttctcttgaatattcttttattactga 40909225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 490
Target Start/End: Original strand, 40887338 - 40887389
Alignment:
Q  439 ttaagcaatcaaaagggataaattttgcttaaaaaataatgtaattattact 490  Q
    ||||| ||||||||| |||||||||||  |||||||||||||| ||||||||    
T  40887338 ttaagaaatcaaaagagataaattttgtataaaaaataatgtatttattact 40887389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 5256830 - 5256762
Alignment:
Q  164 tttaattttgaagtcataaatatacatcataattctttcgaaaaaatatatatttcataattgttctctt 233  Q
    ||||||||||||  ||||||||||||| |||||| |||| |||||| ||||| |||||||||||||||||    
T  5256830 tttaattttgaaaacataaatatacattataattgtttccaaaaaa-atatacttcataattgttctctt 5256762  T

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