View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16399_low_7 (Length: 521)
Name: NF16399_low_7
Description: NF16399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16399_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 44461625 - 44462029
Alignment:
| Q |
19 |
aatttagaccctgaagttcaacaaggtttggctgattgcaaagaaaatatattggatgctgagtctcaacttgaagacactattgctgctttgttggttg |
118 |
Q |
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| T |
44461625 |
aatttagaccctgaagttcaacaaggtttggctgattgcaaagaaaatatattggatgctgagtctcaacttgaagacactattgctgctttgttggttg |
44461724 |
T |
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| Q |
119 |
aatctgatgttgatagtcagaaatggttgaaggctgctttggctgctattactacctgcgataattctattcctggaaatgatgatgttttgtctgtcaa |
218 |
Q |
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| T |
44461725 |
aatctgatgttgatagtcagaaatggttgaaggctgctttggctgctattactacctgcgataattctattcctggaaatgatgatgttttgtctgtcaa |
44461824 |
T |
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| Q |
219 |
gagtagaaccttccgcagactcaccaacattgttgttcttattaccagggccttgcctaaacgtacttcttctgtccaaccagtcaaagtgtaatttaaa |
318 |
Q |
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| T |
44461825 |
gagtagaatcttccgcagactcaccaacattgttgttcttattaccagggccttgcctaaacgtactccttctgcccaaccagtcaaagtgtaatttaaa |
44461924 |
T |
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| Q |
319 |
tcatctttgctctgtgctatatattattgatcaagctcatatccttgttaaattttatgtgaatcttatatatatgattctatattattattaaagagtg |
418 |
Q |
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| T |
44461925 |
tcatctttgctctgtgc--tatattattgatcaagctcatatccttgttaaattttatgtgaatcttatatatatgattctatattattattaaagagtg |
44462022 |
T |
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| Q |
419 |
ttgttaa |
425 |
Q |
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| T |
44462023 |
ttgttaa |
44462029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 465 - 511
Target Start/End: Original strand, 44462068 - 44462114
Alignment:
| Q |
465 |
atgtgagaagaatgcaaaacaaaacaaaccggaaaacttgtcctatg |
511 |
Q |
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| T |
44462068 |
atgtgagaagaatgcaaaacaaaacaaaccggaaaacttgtcctatg |
44462114 |
T |
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