View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_high_12 (Length: 364)
Name: NF1639_high_12
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 9485792 - 9486129
Alignment:
| Q |
11 |
caaaggtgcttatatggaaataatccaaactagnnnnnnnccaaatcaacttcacaaaatggaaaatttaaagatcaaaggctatgatgatcaaagtaag |
110 |
Q |
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| T |
9485792 |
caaaggtgcttgtatgaaaataatccaaactaggaaaaaaccaaatcaacttcacaaaatggaaaatttaaagatcaaaggctatgatgatcaaagtaag |
9485891 |
T |
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| Q |
111 |
aaagtaagaacaatatcttcaccaccaatggttggtgtgtacatgaatagcaatgtgcagtgtgtgaataattcattgttattacatgcttcttgtaccc |
210 |
Q |
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| T |
9485892 |
aaagtaagaacaatatcttcaccaccaatggttggtgtgtacatgaatagcaatgtgcagtgtgtgaataattcattgttattacatgcttcttgtaccc |
9485991 |
T |
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| Q |
211 |
accatgatccaggggtgcaacttacactttcaaagaagccatttggtaaaggctatatcaagtggtagtgaaattaattgatttggaggcggtgtttcaa |
310 |
Q |
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| T |
9485992 |
accatgatccaggggtgcaacttacactttcaaagaagccatttggtaaaggctatatcaagtggtagtgaaattaattgatttggaggcggtgtttcaa |
9486091 |
T |
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| Q |
311 |
gtattgttatggtttatagtattgttacaagtagtagt |
348 |
Q |
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| T |
9486092 |
gtattgttatggtttatagtattgttacaagtagtagt |
9486129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 265
Target Start/End: Original strand, 48961543 - 48961658
Alignment:
| Q |
150 |
tacatgaatagcaatgtgcagtgtgtgaataattcattgttattacatgcttcttgtacccaccatgatccaggggtgcaacttacactttcaaagaagc |
249 |
Q |
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| T |
48961543 |
tacatgaacagcaatgtacagtgtgtcaataactctctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagc |
48961642 |
T |
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| Q |
250 |
catttggtaaaggcta |
265 |
Q |
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| T |
48961643 |
catttggtgaaggcta |
48961658 |
T |
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