View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_high_15 (Length: 335)
Name: NF1639_high_15
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 105 - 318
Target Start/End: Complemental strand, 12882319 - 12882105
Alignment:
| Q |
105 |
tgtatccgacaccggaatacttctaatctaagacgtgttggtgcttcatggaagacaagtgatacagagaa-taattaagaggagtttctagccacagtt |
203 |
Q |
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| T |
12882319 |
tgtatccgacaccgaaatacgtctaatctaaggcatgttcgcgcttcatggaagtcaagtgatacagagaaataattaagaggagtttctagccacagtt |
12882220 |
T |
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| Q |
204 |
ttgagtgtcatccaaatgagagtgctaatttcatccctttctcaaacaccacaaatccttaaaattcaatggccaaagagcttccaaaagtacttgttct |
303 |
Q |
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| T |
12882219 |
ttgagtgtcatccaaataaaagtgctaagttcatccctttctcaaacaccacaaatccttaaaattcaatggccaaagaccttccaaaagtacttgttct |
12882120 |
T |
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| Q |
304 |
tggtccaccaacatg |
318 |
Q |
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| T |
12882119 |
tggtccaccaacatg |
12882105 |
T |
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