View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1639_high_17 (Length: 306)

Name: NF1639_high_17
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1639_high_17
NF1639_high_17
[»] chr2 (3 HSPs)
chr2 (1-291)||(39693895-39694189)
chr2 (32-96)||(2336696-2336762)
chr2 (39-85)||(2323694-2323740)
[»] chr4 (6 HSPs)
chr4 (32-86)||(29802613-29802667)
chr4 (40-138)||(31957580-31957681)
chr4 (35-85)||(23210827-23210876)
chr4 (39-94)||(30788297-30788354)
chr4 (45-86)||(2041166-2041207)
chr4 (36-65)||(50400019-50400048)
[»] chr7 (2 HSPs)
chr7 (39-86)||(23714892-23714939)
chr7 (32-83)||(7192787-7192838)
[»] chr1 (3 HSPs)
chr1 (40-85)||(7373363-7373408)
chr1 (52-85)||(8240396-8240429)
chr1 (31-83)||(47493819-47493871)
[»] chr8 (2 HSPs)
chr8 (32-78)||(11970314-11970360)
chr8 (32-86)||(40991825-40991879)
[»] chr3 (1 HSPs)
chr3 (32-86)||(41857496-41857550)
[»] chr6 (2 HSPs)
chr6 (31-68)||(10498844-10498881)
chr6 (32-85)||(29028162-29028215)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 39693895 - 39694189
Alignment:
Q  1 taaaaatctcacgttatttataagtgagagtataaactcaatgtcttaagattttgggttaagatatggtgtccaactcacttgtggttgctctgaccta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39693895 taaaaatctcacgttatttataagtgagagcataaactcaatgccttaagattttgggttaagatgtggtgtccaactcacttgtggttgctctgaccta 39693994  T
Q  101 gtgtgtatgatcctctgaactccactcatgactcaacaaaccctaacaaacaacattgcctaactgttttctaacaggggatgcatcttgtgatagtttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39693995 gtgtgtatgatcctctgaactccactcatgactcaacaaaccctaacaaacaacattgcctaactgttttctaacaggggatgcatcttgtgatagtttt 39694094  T
Q  201 ggtggtggagaaatcagtgatttattttattgaaagaaaatca----ttacagtaattgttgcttcttaaattgaggcgaaaacactgaatatga 291  Q
    ||||||||||||||||||||||||||||| |||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39694095 ggtggtggagaaatcagtgatttattttactgaaagaaaatcattacttacagtaattgttgcttcttaaattgaggcgaaaacactgaatatga 39694189  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 2336696 - 2336762
Alignment:
Q  32 ataaactcaatgtcttaagattttgggttaagatatggtgtccaactcact--tgtggttgctctga 96  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  2336696 ataaattcaatgccttaagattttgggttaagatgtggtgtccaactcacttgtgtggttgctctga 2336762  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 2323694 - 2323740
Alignment:
Q  39 caatgtcttaagattttgggttaagatatggtgtccaactcacttgt 85  Q
    ||||| |||||| |||| ||||||||| |||||||||||||||||||    
T  2323694 caatgccttaaggttttaggttaagatgtggtgtccaactcacttgt 2323740  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 29802613 - 29802667
Alignment:
Q  32 ataaactcaatgtcttaagattttgggttaagatatggtgtccaactcacttgtg 86  Q
    |||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  29802613 ataaacccaatgccttaaggttttgtgttaagatatggtgtccaactcacttgtg 29802667  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 31957580 - 31957681
Alignment:
Q  40 aatgtcttaagattttgggttaagatatggtgtccaactcactt--gtggttgctc-tgacctagtgtgtatgatcctctgaactccactcatgactcaa 136  Q
    |||| |||||| |||||||||||||| |||||||||||||||||  |||||||||| || |||  || | ||||||| |||| |||| |||||||| |||    
T  31957580 aatgccttaaggttttgggttaagatgtggtgtccaactcacttgcgtggttgctcttgccctgatgaggatgatcccctgagctcccctcatgacccaa 31957679  T
Q  137 ca 138  Q
    ||    
T  31957680 ca 31957681  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 23210876 - 23210827
Alignment:
Q  35 aactcaatgtcttaagattttgggttaagatatggtgtccaactcacttgt 85  Q
    |||||||||||||||||||| || ||||||| || ||||||||||||||||    
T  23210876 aactcaatgtcttaagatttagg-ttaagatgtgatgtccaactcacttgt 23210827  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 30788297 - 30788354
Alignment:
Q  39 caatgtcttaagattttgggttaagatatggtgtccaactcactt--gtggttgctct 94  Q
    |||||||||||| |||||||||||||| |||||| ||||||| ||  |||||||||||    
T  30788297 caatgtcttaaggttttgggttaagatgtggtgttcaactcaattgagtggttgctct 30788354  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 2041166 - 2041207
Alignment:
Q  45 cttaagattttgggttaagatatggtgtccaactcacttgtg 86  Q
    |||||| |||||||| ||||| ||||||||||||||||||||    
T  2041166 cttaaggttttgggtgaagatgtggtgtccaactcacttgtg 2041207  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 50400019 - 50400048
Alignment:
Q  36 actcaatgtcttaagattttgggttaagat 65  Q
    ||||||||||||||||||||||||||||||    
T  50400019 actcaatgtcttaagattttgggttaagat 50400048  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 23714939 - 23714892
Alignment:
Q  39 caatgtcttaagattttgggttaagatatggtgtccaactcacttgtg 86  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  23714939 caatgccttaagattttgggtgaagatgtggtgtccaactcacttgtg 23714892  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 7192787 - 7192838
Alignment:
Q  32 ataaactcaatgtcttaagattttgggttaagatatggtgtccaactcactt 83  Q
    ||||||||||||||||||| ||||| || ||||| || ||||||||||||||    
T  7192787 ataaactcaatgtcttaaggttttgagtaaagatgtgatgtccaactcactt 7192838  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 7373363 - 7373408
Alignment:
Q  40 aatgtcttaagattttgggttaagatatggtgtccaactcacttgt 85  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||    
T  7373363 aatgtcttaaaatttttggttaagatgtggtgtccaactcacttgt 7373408  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 8240429 - 8240396
Alignment:
Q  52 ttttgggttaagatatggtgtccaactcacttgt 85  Q
    |||||||||||||| |||||||||||||||||||    
T  8240429 ttttgggttaagatgtggtgtccaactcacttgt 8240396  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 47493819 - 47493871
Alignment:
Q  31 tataaactcaatgtcttaagattttgggttaagatatggtgtccaactcactt 83  Q
    |||||||||||| |||||| |||||| ||||||||||   |||||||||||||    
T  47493819 tataaactcaatatcttaaaattttgagttaagatattacgtccaactcactt 47493871  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 11970314 - 11970360
Alignment:
Q  32 ataaactcaatgtcttaagattttgggttaagatatggtgtccaact 78  Q
    |||||||||||| ||| ||||||||||||||||| ||||| ||||||    
T  11970314 ataaactcaatgcctttagattttgggttaagatgtggtgcccaact 11970360  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 40991825 - 40991879
Alignment:
Q  32 ataaactcaatgtcttaagattttgggttaagatatggtgtccaactcacttgtg 86  Q
    |||||| ||||| || ||| |||||||||||||| ||||||||||||||| ||||    
T  40991825 ataaacccaatgcctcaaggttttgggttaagatgtggtgtccaactcacctgtg 40991879  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 41857496 - 41857550
Alignment:
Q  32 ataaactcaatgtcttaagattttgggttaagatatggtgtccaactcacttgtg 86  Q
    |||||||||||| |||||  |||||||||||||| || ||| |||||||||||||    
T  41857496 ataaactcaatgacttaaagttttgggttaagatgtgatgttcaactcacttgtg 41857550  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 10498881 - 10498844
Alignment:
Q  31 tataaactcaatgtcttaagattttgggttaagatatg 68  Q
    |||||||||||||||||||  |||||||||||||||||    
T  10498881 tataaactcaatgtcttaaagttttgggttaagatatg 10498844  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 29028162 - 29028215
Alignment:
Q  32 ataaactcaatgtcttaagattttgggttaagatatggtgtccaactcacttgt 85  Q
    |||||||||||||| |||  ||||| |||||||| |||||||||||| ||||||    
T  29028162 ataaactcaatgtcctaatgttttgagttaagatgtggtgtccaacttacttgt 29028215  T

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