View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1639_high_2 (Length: 577)
Name: NF1639_high_2
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 13 - 565
Target Start/End: Original strand, 36283718 - 36284269
Alignment:
| Q |
13 |
aaggcgagtagttatgcggttgagaatttgaacaaattgaaagaagcgcgtattggtatctattttgatcatgaaaataaagaagtaaaacaaaatatat |
112 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36283718 |
aaggcgagtaattatgaggttgagaatttgaacaaattgaaagaagcacgtattggtatctattttgatcatgaaaataaagaagtaaaacaaaatatat |
36283817 |
T |
|
| Q |
113 |
caaatctcttcaatggcattcataaaaccaggtttctttgcttagatatggattccacagaggtaaaagccctatttaccgatatttttaatataggaat |
212 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36283818 |
caaatctcctcaatggcattcataaaaccaggtttctttgcttagatatggattccacagaggtaagagccctatttaccgatatttttaatataggaat |
36283917 |
T |
|
| Q |
213 |
attgtgtgttatttttcataactcttttgttatttttatccatgttgcaggtgcttacttatgcttgtctagaatttccaacatttaacaatttgggtta |
312 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36283918 |
--tgtgtcttatttttcataactcttttgttatttttatccatgttgcaggtgcttacttatgcttgtctagaatttccaacatttaacaatttgggtta |
36284015 |
T |
|
| Q |
313 |
tctacaattatatttaaaaacctttaactcacattttctagttaaactgttactagaaaaatgccccaatcttgatgttcttgagattattaaggttggt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36284016 |
tctacaattatatttaaaaacctttaactcacattttctagttaaactgttactagaaaaatgccccaatcttgatgttcttgagattattaaggttggt |
36284115 |
T |
|
| Q |
413 |
ttactcttgagatttggttaattatcggttaacttttttaatttactttctttttctcaagacaa-tatagatgttttgtgatctcttttgacaggttga |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36284116 |
ttactcttgagatttggttaattatcggttaacttttttaatttactttctttttctcatgacaattatagatgttttgtgatctcttttgacaggttga |
36284215 |
T |
|
| Q |
512 |
tgacctatgcgataatgaaattaaatgggcagaaccaacaatagttcctagctg |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36284216 |
tgacctatgcgataatgaaattaaatgggcagaaccaacaatagttcctagctg |
36284269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 197 - 565
Target Start/End: Original strand, 34554768 - 34555133
Alignment:
| Q |
197 |
tttttaatataggaatattgtgtgttatttttcataactcttttgttatttttatccatgttgcaggtgcttacttatgcttgtctagaatttccaacat |
296 |
Q |
| |
|
|||||| ||||||||| ||| |||||||| |||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34554768 |
tttttagtataggaat--tgtatgttatttctcataattcttt-gttatttttatccac-ttgcaggtgcttacttatgcttgtctagaatttccaacat |
34554863 |
T |
|
| Q |
297 |
ttaacaatttgggttatctacaattatatttaaaaacctttaactcacattttctagttaaactgttactagaaaaatgccccaatcttgatgttcttga |
396 |
Q |
| |
|
|| | |||||||| ||||||||||||||||||||| | || | ||| ||||||||||| | |||| |||||||||||||||||||| || |||| || |
|
|
| T |
34554864 |
ttgatcatttgggtcatctacaattatatttaaaaatccttgattcatattttctagttgagttgttgctagaaaaatgccccaatctagaatttctaga |
34554963 |
T |
|
| Q |
397 |
gattattaaggttggtttactcttgagatttggttaattatcggttaacttttttaatttactttctttttctcaagacaa-tatagatgttttgtgatc |
495 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||| | ||||||| || | ||||| |||||||| ||| | | |||| ||||| ||| |||||| | |
|
|
| T |
34554964 |
gattatcaaggttagttaactcttgagatttagctaattatttcttgaatttttatttttactttgtttcattggatacaattatagttgtgttgtgacc |
34555063 |
T |
|
| Q |
496 |
tcttttgacaggttgatgacctatgcgataatgaaattaaatgggcagaaccaacaatagttcctagctg |
565 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
34555064 |
tcacttgacaggttgatgaactatgtgataatgaaattgaatggagacaaccaacaatagttcctagctg |
34555133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 34554472 - 34554624
Alignment:
| Q |
25 |
tatgcggttgagaatttgaacaaattgaaagaagcgcgtattggtatctattttgatcatgaaaataaagaagtaaaacaaaatatatcaaatctcttca |
124 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||||| | |||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||| | |||| |
|
|
| T |
34554472 |
tatgtggttgagaatttggacaatttgaaagaagcacatattggtatccattttgattatgaaaataaaaaagtaaaagaaaatatagcaaatattttca |
34554571 |
T |
|
| Q |
125 |
atggcattcataaaaccaggtttctttgcttagatatggattccacagaggta |
177 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||| || || ||||||||||| |
|
|
| T |
34554572 |
atggggttcgtaaaaccagatttctttgcttagatttgtataccacagaggta |
34554624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University