View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_high_25 (Length: 244)
Name: NF1639_high_25
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_high_25 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 30978175 - 30977950
Alignment:
| Q |
19 |
gtttaaacaccaagaggaaaagttagatttggagcttcatctctagctagttatgtaacaaacaaggtgcaatttatcaaacaaatttatatatatagtt |
118 |
Q |
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| T |
30978175 |
gtttaaacaccaagaggaaaagttagatttggagcttcatctctagctagttatgtaacaatcaaggtgcaatttatcaaacaaatttatatatatagtt |
30978076 |
T |
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| Q |
119 |
cagtgactagctagtactgcaaatgatgtgcaacttcagatatatttgttttaactttcttgcattttaattaggactttttgtattattatgcatttca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30978075 |
cagtgactagctagtactgcaaatgatgtgcaacttcagatatatttgttttaactttcttgcattttaattaggactttttgtattattatgcatttca |
30977976 |
T |
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| Q |
219 |
aggaccttattgtttagtatttcttt |
244 |
Q |
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|||||||||||||||||||||||||| |
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| T |
30977975 |
aggaccttattgtttagtatttcttt |
30977950 |
T |
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