View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1639_high_28 (Length: 229)

Name: NF1639_high_28
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1639_high_28
NF1639_high_28
[»] chr6 (17 HSPs)
chr6 (16-214)||(4602421-4602619)
chr6 (84-200)||(4299194-4299310)
chr6 (20-214)||(4617654-4617848)
chr6 (104-200)||(4259547-4259643)
chr6 (77-214)||(4592863-4593000)
chr6 (74-214)||(4564343-4564483)
chr6 (84-200)||(4622783-4622899)
chr6 (71-200)||(4255981-4256113)
chr6 (84-175)||(4626619-4626710)
chr6 (104-202)||(4266559-4266657)
chr6 (84-158)||(4470488-4470562)
chr6 (16-158)||(4514426-4514568)
chr6 (104-201)||(4481335-4481432)
chr6 (94-158)||(4561189-4561253)
chr6 (94-158)||(4574993-4575057)
chr6 (58-158)||(4458280-4458380)
chr6 (94-202)||(4506498-4506606)
[»] chr3 (1 HSPs)
chr3 (18-214)||(1281746-1281942)
[»] chr5 (2 HSPs)
chr5 (104-193)||(24107025-24107114)
chr5 (104-202)||(24103640-24103738)
[»] scaffold0477 (1 HSPs)
scaffold0477 (84-200)||(4062-4178)
[»] chr7 (1 HSPs)
chr7 (104-200)||(3087063-3087159)
[»] scaffold0288 (1 HSPs)
scaffold0288 (97-200)||(3104-3207)
[»] scaffold0199 (1 HSPs)
scaffold0199 (19-212)||(97-291)
[»] chr8 (2 HSPs)
chr8 (19-212)||(1674860-1675054)
chr8 (60-200)||(20863192-20863332)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 4602619 - 4602421
Alignment:
Q  16 acagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatacttacaatgaacttgaga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4602619 acagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctactattcttttgaatacttacaatgaacttgaga 4602520  T
Q  116 gtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaactccacaaattcatcaattgg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4602519 gtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgcattcattattaaatcaaactccacaaattcatcaattgg 4602421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 4299194 - 4299310
Alignment:
Q  84 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcatta 183  Q
    |||| |||| ||||||||  |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  4299194 tattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctattctatgttcccttctttatatactattggacctttaccttcatta 4299293  T
Q  184 ttaaatcaaactccaca 200  Q
    |||||||||||||||||    
T  4299294 ttaaatcaaactccaca 4299310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 4617848 - 4617654
Alignment:
Q  20 atccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtga 119  Q
    ||||||||||||||||| ||||||||||| | ||| |||||||| || |||| | |||| ||| ||||||||||||||||| ||||||||||||||||||    
T  4617848 atccaaatgatattatgttagaattctttatagaagttgcagatcgagttaacaaagacactactattcttttgaatactttcaatgaacttgagagtga 4617749  T
Q  120 tgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaactccacaaattcatcaattgg 214  Q
    |||||| ||||| || |  || |   | |||||| | ||| | || || ||||| |||||||||||||| |||||||||||||||||||||||||    
T  4617748 tgtaataaatgctctctcctccacaattccttctatttatccgattggccctttaccttcattattaaaacaaactccacaaattcatcaattgg 4617654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 4259547 - 4259643
Alignment:
Q  104 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaactccaca 200  Q
    |||||||||||||||||||||||||||  || |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  4259547 atgaacttgagagtgatgtaatgaatgtgctctattctatgttcccttctttatatgctattggacctttaccttcattattaaatcaaactccaca 4259643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 4593000 - 4592863
Alignment:
Q  77 actctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgcc 176  Q
    |||||| |||| |||||||||||| |||||||||||||||||||||||| ||||| || |  |||||||| |||||| | ||  | || || ||||| ||    
T  4593000 actctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttacc 4592901  T
Q  177 ttcattattaaatcaaactccacaaattcatcaattgg 214  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  4592900 ttcattattaaaccaaactccacaaatccatcaattgg 4592863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 4564483 - 4564343
Alignment:
Q  74 gagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggaccttt 173  Q
    |||||||||  ||| |||||||||||| | |||||||| ||||||||||||| ||||| || |  |||||||| |||||| | ||  | || || |||||    
T  4564483 gagactctacaattgttttgaatactttccatgaactttagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggcccttt 4564384  T
Q  174 gccttcattattaaatcaaactccacaaattcatcaattgg 214  Q
     |||||||||||||| |||||||||||||||||||||||||    
T  4564383 accttcattattaaaccaaactccacaaattcatcaattgg 4564343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 4622899 - 4622783
Alignment:
Q  84 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcatta 183  Q
    |||| |||| |||||||| ||||||||||||| |||||  |||||||| || ||||| |||||||| ||||| |||||  | |||||||| |||||||||    
T  4622899 tattatttttaatacttataatgaacttgagactgatgcgatgaatgcgctctattcaatgttcccatctttgtataccgttggacctttaccttcatta 4622800  T
Q  184 ttaaatcaaactccaca 200  Q
    |||||||||||||||||    
T  4622799 ttaaatcaaactccaca 4622783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 4255981 - 4256113
Alignment:
Q  71 atagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatatt---ctatgttcccttctttatatactatcgg 167  Q
    |||||| ||||  |||| |||| || ||||| |||||||||||||| |||||| ||||||| || ||||   |||||||| ||| ||| ||||| || ||    
T  4255981 atagagcctctgctattgtttttaacacttataatgaacttgagagcgatgtattgaatgctctctattattctatgttctcttgtttgtataccattgg 4256080  T
Q  168 acctttgccttcattattaaatcaaactccaca 200  Q
    |||||| ||||||||||||||||||||||||||    
T  4256081 acctttaccttcattattaaatcaaactccaca 4256113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 4626710 - 4626619
Alignment:
Q  84 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgc 175  Q
    |||| |||| || |||||| ||||||||||| |||||||||||||||| || ||||||| ||||| |||| ||||||| || ||||||||||    
T  4626710 tattgttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctattctacgttcctttctgtatataccattggacctttgc 4626619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 4266559 - 4266657
Alignment:
Q  104 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaactccacaaa 202  Q
    ||||||||||||||||||| |||||||| || || ||||||||||||||| |||| || || || || ||  |||| || |||||||||| ||||||||    
T  4266559 atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaa 4266657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 4470562 - 4470488
Alignment:
Q  84 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 158  Q
    |||| ||||||||||||  ||||||||||| |||||||| ||||||| ||| |||||||| ||||||||| ||||    
T  4470562 tattgttttgaatacttctaatgaacttgaaagtgatgttatgaatgaactctattctatattcccttctctata 4470488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 4514426 - 4514568
Alignment:
Q  16 acagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatacttacaatgaacttgaga 115  Q
    |||||| | |||||| | ||| |||||||  | |||||||| | ||||||| || ||||||  |||  |||| |||| |||||||  ||||| |||||||    
T  4514426 acagatgctaatgatttgatgttagaatttatctttgaaatggtagatagacttcatagagcttctgctatttttttaaatacttctaatgatcttgaga 4514525  T
Q  116 gtgatgtaatgaatgcactatattctatgttcccttctttata 158  Q
    ||||||| |||||||| || ||||||||| |||||||| ||||    
T  4514526 gtgatgttatgaatgctctttattctatgctcccttctctata 4514568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 4481432 - 4481335
Alignment:
Q  104 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaactccacaa 201  Q
    ||||||||||||||||||| |||||| | || |||||||| ||||||||| |||| || || || || ||| |||| || |||||||||| |||||||    
T  4481432 atgaacttgagagtgatgttatgaattctctctattctatattcccttctctatacaccattggtccattggcttcttttttaaatcaaagtccacaa 4481335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 4561253 - 4561189
Alignment:
Q  94 aatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 158  Q
    |||||||  |||||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  4561253 aatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttcccttctctata 4561189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 4575057 - 4574993
Alignment:
Q  94 aatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 158  Q
    |||||||  |||||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  4575057 aatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttcccttctctata 4574993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 4458380 - 4458280
Alignment:
Q  58 gcagatagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttat 157  Q
    |||||||||| | |||||| ||||  |||| || | |||||||   ||||||||||||||||||| |||||| | || || ||||||||||||||| |||    
T  4458380 gcagatagatgtcatagagcctcttctattgttatcaatacttcttatgaacttgagagtgatgttatgaatactctctactctatgttcccttctatat 4458281  T
Q  158 a 158  Q
    |    
T  4458280 a 4458280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 4506606 - 4506498
Alignment:
Q  94 aatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaa 193  Q
    |||||||  ||||||||||||||| ||||  ||||||| ||  ||  |||||| |||||| |||| ||||| || |||||  |||||||  |||||||||    
T  4506606 aatacttctaatgaacttgagagtaatgttctgaatgctcttgatattatgtttccttctctatacactattggccctttaacttcatttgtaaatcaaa 4506507  T
Q  194 ctccacaaa 202  Q
     ||||||||    
T  4506506 gtccacaaa 4506498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 1281942 - 1281746
Alignment:
Q  18 agatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatacttacaatgaacttgagagt 117  Q
    ||||| ||| ||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  1281942 agatcgaaacgatattatgttagaattctttattgaaatggcagatagagttaatagagactctactattcttttgaatactttcaatgaacttgagagt 1281843  T
Q  118 gatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaactccacaaattcatcaattgg 214  Q
    |||||||| ||||| || |  |||||  | |||||| | ||  | || || ||||| |||||||||||||| |||||||||||||||||||||||||    
T  1281842 gatgtaataaatgctctctcctctataattccttctgtttacccgattggccctttaccttcattattaaaccaaactccacaaattcatcaattgg 1281746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 24107114 - 24107025
Alignment:
Q  104 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaa 193  Q
    |||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||    
T  24107114 atgaacttgagagtgatgtaatgaatacgctctattctatgttcccttttttatatactattggacctttaccttcattattaaatcaaa 24107025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 24103738 - 24103640
Alignment:
Q  104 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaactccacaaa 202  Q
    ||||||||||||||||||| |||||||| || || ||||||||||||||| |||| || || || || ||  |||| || |||||||||| ||||||||    
T  24103738 atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaa 24103640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 4062 - 4178
Alignment:
Q  84 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcatta 183  Q
    |||| |||| || |||||| ||||||||||||| | |||| ||||||| || |||||||||||||||||||||||||| || ||||||||  ||||||||    
T  4062 tattgttttcaacacttacgatgaacttgagagcggtgtattgaatgctctctattctatgttcccttctttatataccattggacctttaacttcatta 4161  T
Q  184 ttaaatcaaactccaca 200  Q
    |||||||||||||||||    
T  4162 ttaaatcaaactccaca 4178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 3087159 - 3087063
Alignment:
Q  104 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaactccaca 200  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| || ||||| || |||||| || ||||||||||| ||||    
T  3087159 atgaacttgagagtgatgtaatgaatgcgctatattctgtgttcccttcattatataccattggaccattaccttcactactaaatcaaacttcaca 3087063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 3104 - 3207
Alignment:
Q  97 acttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaactc 196  Q
    ||||| ||||||||||||||||||||| ||||||| ||  | ||||||||||| || ||||| | ||||||||| || ||||||||||||| ||||||||    
T  3104 acttataatgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacagtatcggaccattaccttcattattaagtcaaactc 3203  T
Q  197 caca 200  Q
    ||||    
T  3204 caca 3207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 291 - 97
Alignment:
Q  19 gatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtg 118  Q
    |||||||||||||||||| |||| || ||  ||||  | || |||| | || | ||||||||||  ||| |||||||||||| |||||||||||||||||    
T  291 gatccaaatgatattatgttagactttttaattgatgtcgctgataaagttcacagagactctacaattattttgaatactttcaatgaacttgagagtg 192  T
Q  119 atgtaatgaatgcact-atattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaactccacaaattcatcaatt 212  Q
    ||||||| |  || ||  |  ||| |||| |||||| | ||  | || || ||||| |||||||||||||| |||||||||||||||||||||||    
T  191 atgtaataaccgctctcctcctctttgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaatt 97  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 1675054 - 1674860
Alignment:
Q  19 gatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtg 118  Q
    |||||||||||||||||| |||| || ||  ||||  | || |||| | || | ||||||||||  ||| |||||||||||| |||||||||||||||||    
T  1675054 gatccaaatgatattatgttagactttttaattgatgtcgctgataaagttcacagagactctacaattattttgaatactttcaatgaacttgagagtg 1674955  T
Q  119 atgtaatgaatgcact-atattctatgttcccttctttatatactatcggacctttgccttcattattaaatcaaactccacaaattcatcaatt 212  Q
    ||||||| |  || ||  |  ||| |||| |||||| | ||  | || || ||||| |||||||||||||| |||||||||||||||||||||||    
T  1674954 atgtaataaccgctctcctcctctttgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaatt 1674860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 200
Target Start/End: Original strand, 20863192 - 20863332
Alignment:
Q  60 agatagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatat 159  Q
    |||||||||| | |||| ||||  |||| |||| ||||||| |||||| |||||||||||||| |||||||  || |||||||||||||||||| ||||     
T  20863192 agatagatttcacagagcctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctctattctatgttcccttctctatac 20863291  T
Q  160 actatcggacctttgccttcattattaaatcaaactccaca 200  Q
    || || || |||||   ||| || |||||||||| ||||||    
T  20863292 accattggcccttttgtttcttttttaaatcaaagtccaca 20863332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University