View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_high_6 (Length: 474)
Name: NF1639_high_6
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 31870101 - 31869639
Alignment:
| Q |
1 |
ttttagttaattttgattttagtaaaaaggagttttaagtaaattgatttgtgcttaaaagtaacttaacaacaaaataaaattgtgatcggtgtagttt |
100 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||| |||| |||||| |
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| T |
31870101 |
ttttagttaattttgattttagttaaaaggagtttgaagtaaattgatttgtgttgaaaagtaacttaacaacaaaat-----tgtgcacggtttagttt |
31870007 |
T |
|
| Q |
101 |
atattggcttggtatagttt-gcttgatgttgaaactttaaacatgcatcggggtaatgtagtgtaacgttttaaattgtggtcgcgccatggtccttga |
199 |
Q |
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| T |
31870006 |
atattggctttgtatagttttgcttgatgttgaaactttaaacatgcatcggggtaatgtagtgtaacgttttaaattgtggtcgcgccatggtccttga |
31869907 |
T |
|
| Q |
200 |
tataacagagaattgcactcaaatgtgaccgatgctatctcaattatagtcacagtaacaacaaaaaccctgatgttgctgcccagatctcagtcacaga |
299 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31869906 |
tataacagagaattgcactcaaatgcgaccgatgctatctcaattatagtcacagtaacaacaaaaaccctgatgttgctgcccagatctcagtcacaaa |
31869807 |
T |
|
| Q |
300 |
cttctgtttaaaacctttgcagctgcattacatgatgcaatctaaaggtctgctggcaaatgtagtgtaacctttacactgccatttaaaacatcgnnnn |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869806 |
cttctgtttaaaacctttgcagctgcattacatgatgcaatctaaaagtctgctggcaaatgtagtgtaacctttacactgccatttaaaacatcgaaaa |
31869707 |
T |
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| Q |
400 |
nnnttattttttgaagtcgatgtttgtggttgagaattattaacactcaaatatcttgctggtctgtg |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869706 |
aaattattttttgaagtcgatgtttgtggttgagaattattaacactcaaatatcttgctggtctgtg |
31869639 |
T |
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