View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1639_high_9 (Length: 377)

Name: NF1639_high_9
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1639_high_9
NF1639_high_9
[»] chr8 (2 HSPs)
chr8 (24-269)||(35702525-35702770)
chr8 (277-361)||(35703975-35704059)
[»] chr6 (1 HSPs)
chr6 (283-327)||(17252526-17252570)
[»] chr3 (2 HSPs)
chr3 (283-327)||(36624344-36624388)
chr3 (285-326)||(18380624-18380665)
[»] chr4 (1 HSPs)
chr4 (5-35)||(24772659-24772689)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 24 - 269
Target Start/End: Original strand, 35702525 - 35702770
Alignment:
Q  24 aatatagaatgatataaaatcatctattgctttctttatcaccagcaaagaagaacttgggaacaatcaacaataccattttttctattttcaagatttc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35702525 aatatagaatgatataaaatcatctattgctttctttatcaccagcaaagaagaacttgggaacaatcaacaataccatttttcctattttcaagatttc 35702624  T
Q  124 tttcgatgctagacttcgttaagtttgaaaacttacactaaattagaaatgaaacaaacttggacttgtataattgttttgggttcgtaggttttctaaa 223  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35702625 tttcgatgctagacttcgttaagtttaaaagcttacactaaattagaaatgaaacaaacttggacttgtataattgttttgggttcgtagattttctaaa 35702724  T
Q  224 gaaaaattcaatggtatgaacaaaataaaaaatataggaacatgtt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35702725 gaaaaattcaatggtatgaacaaaataaaaaatataggaacatgtt 35702770  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 277 - 361
Target Start/End: Original strand, 35703975 - 35704059
Alignment:
Q  277 tcgaatctgttactgtgtttgggtatcgactgacctctctgttgtaattatttcttgactgttttatttctttttgggatggtct 361  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35703975 tcgaatccgttactgtgtttgggtatcgactgacctctctgttgtaattatttcttgactgttttgtttctttttgggatggtct 35704059  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 17252526 - 17252570
Alignment:
Q  283 ctgttactgtgtttgggtatcgactgacctctctgttgtaattat 327  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||    
T  17252526 ctgttactttgtttgggtatcgactgacctctcttttgtaattat 17252570  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 36624344 - 36624388
Alignment:
Q  283 ctgttactgtgtttgggtatcgactgacctctctgttgtaattat 327  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||    
T  36624344 ctgttactttgtttgggtatcgactgacctctcctttgtaattat 36624388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 18380665 - 18380624
Alignment:
Q  285 gttactgtgtttgggtatcgactgacctctctgttgtaatta 326  Q
    ||||||||||||||||||| |||||||||||  |||||||||    
T  18380665 gttactgtgtttgggtatcaactgacctctcctttgtaatta 18380624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 24772689 - 24772659
Alignment:
Q  5 tgtacaaatatcatttctcaatatagaatga 35  Q
    |||||||||||||||||||||||||||||||    
T  24772689 tgtacaaatatcatttctcaatatagaatga 24772659  T

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