View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1639_low_10 (Length: 380)

Name: NF1639_low_10
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1639_low_10
NF1639_low_10
[»] chr7 (5 HSPs)
chr7 (22-380)||(45685392-45685747)
chr7 (149-231)||(31169225-31169306)
chr7 (44-113)||(5817181-5817250)
chr7 (44-113)||(23402924-23402993)
chr7 (45-114)||(23580825-23580893)
[»] chr4 (4 HSPs)
chr4 (44-113)||(34670576-34670645)
chr4 (44-111)||(18912276-18912343)
chr4 (205-331)||(42234067-42234192)
chr4 (69-113)||(5112379-5112423)
[»] chr5 (4 HSPs)
chr5 (161-289)||(25784925-25785052)
chr5 (44-110)||(33030854-33030920)
chr5 (44-116)||(3651617-3651689)
chr5 (57-113)||(28832387-28832443)
[»] chr2 (4 HSPs)
chr2 (42-111)||(35397626-35397694)
chr2 (64-116)||(44732088-44732140)
chr2 (44-113)||(28770685-28770754)
chr2 (57-113)||(2869603-2869659)
[»] chr1 (6 HSPs)
chr1 (44-114)||(918389-918460)
chr1 (202-252)||(6068290-6068340)
chr1 (44-111)||(35109450-35109517)
chr1 (42-112)||(32736908-32736978)
chr1 (44-113)||(17345430-17345499)
chr1 (57-113)||(32889570-32889626)
[»] chr8 (6 HSPs)
chr8 (44-113)||(9054748-9054817)
chr8 (58-114)||(6366636-6366692)
chr8 (259-331)||(11772235-11772307)
chr8 (44-110)||(3051237-3051303)
chr8 (139-237)||(37043786-37043883)
chr8 (57-113)||(19752304-19752360)
[»] chr6 (2 HSPs)
chr6 (45-113)||(31936695-31936763)
chr6 (48-113)||(1115015-1115080)
[»] chr3 (2 HSPs)
chr3 (144-214)||(37387632-37387701)
chr3 (44-113)||(1417391-1417460)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 22 - 380
Target Start/End: Complemental strand, 45685747 - 45685392
Alignment:
Q  22 agaacttaggtctcaagctgataaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaacaagaaatga 121  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  45685747 agaacttagatctcaagctgacaaagaacaaaccttaatttctatccattttttaagtcactcaaagtcgcaatgaatcctaagagaaaacaagaaa-ga 45685649  T
Q  122 agnnnnnnnnatcctttctctgatgagatctgactatcaaaggtgtttgtgaattgtttcacaatccaagaatctcacctcaaagacactcaacttttag 221  Q
    |         ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||     
T  45685648 aagtttttttatcctttctttgatgagatctgactatcaaaggtgtttgtgaattgtttcacaacccaagaatctcaccccaaagacactcaacttttaa 45685549  T
Q  222 cctttaagttccctcaaagttttctcatttgatttgtcaagattctctctcttaaaactactaaaaaattgaagattgaaagcttttatagtacccagac 321  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  45685548 cctttaagttccctaaaagttttctcatttgatctgtcaagattctctctcttaaaactactaaaaaattgaagatcgaaagcttttatagtactcagac 45685449  T
Q  322 ccaggcaaaaaatcgtgcaacgattttcctggcgccaatcagaaactcaaacacaatat 380  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45685448 ccaggc--aaaatcgtgcaacgattttcctggcgccaatcagaaactcaaacacaatat 45685392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 31169306 - 31169225
Alignment:
Q  149 atctgactatcaaaggtgtttgtgaattgtttcacaatccaagaatctcacctcaaagacactcaacttttagcctttaagtt 231  Q
    |||| |||||| |||||||||||||| |||||| ||| |||||||||||| | |||||||||| |||  ||||||||||||||    
T  31169306 atctcactatccaaggtgtttgtgaagtgtttcccaacccaagaatctca-cacaaagacacttaacccttagcctttaagtt 31169225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 5817250 - 5817181
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    |||||||||| | |||||||||||||||||| || ||||||| | || ||||||||||||||| ||||||    
T  5817250 aaagaacaaaacctaatttctatccatttttcaagtcactcacactctcaatgaatcctaagaaaaaaca 5817181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 23402993 - 23402924
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    |||||||||  | ||||||||| |||||||| | |||||||| | || ||||||||||||||||||||||    
T  23402993 aaagaacaagtcctaatttctacccatttttcacatcactcacactctcaatgaatcctaagagaaaaca 23402924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 23580893 - 23580825
Alignment:
Q  45 aagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaacaa 114  Q
    ||||||||||||||||||||||||| |||| || |||||||||  | ||||| ||| |||||||||||||    
T  23580893 aagaacaaaccttaatttctatcca-ttttcaagtcactcaaacccacaatggatcataagagaaaacaa 23580825  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 34670645 - 34670576
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    |||||||||| | |||||||||||||||||| || ||||||| | || ||||||||||||||||||||||    
T  34670645 aaagaacaaatcataatttctatccatttttcaagtcactcacactcacaatgaatcctaagagaaaaca 34670576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 18912343 - 18912276
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaa 111  Q
    |||||||||||| ||| || ||||||||||| || |||||||||  | ||||||||||||||||||||    
T  18912343 aaagaacaaaccctaaattatatccatttttcaagtcactcaaacccacaatgaatcctaagagaaaa 18912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 331
Target Start/End: Complemental strand, 42234192 - 42234067
Alignment:
Q  205 agacactcaacttttagcctttaagttccctcaaagttttctcatttgatttgtcaagattctctctcttaaaactactaaaaaattgaagattgaaagc 304  Q
    |||||||||||| ||  ||| |||||||||| ||||||||||| |||| |||| ||||||||| |||||| || | ||  ||||| ||  || |||| ||    
T  42234192 agacactcaactcttcacctctaagttccctaaaagttttctc-tttggtttgacaagattctatctcttgaagcaacccaaaaaatgttgaatgaaggc 42234094  T
Q  305 ttttatagtacccagacccaggcaaaa 331  Q
     | ||||||||| ||||||| ||||||    
T  42234093 atatatagtacctagacccacgcaaaa 42234067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 5112379 - 5112423
Alignment:
Q  69 attttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  5112379 attttttaagtcactcacactcacaatgaatcctaagagaaaaca 5112423  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 289
Target Start/End: Original strand, 25784925 - 25785052
Alignment:
Q  161 aaggtgtttgtgaattgtttcacaatccaagaatctcacctcaaagacactcaacttttagcctttaagttccctcaaagttttctcatttgatttgtca 260  Q
    |||||||||| ||| |||||| | | ||||||||||||||| ||| ||||||||||||||| || |||||||| | |||||| |||||| |  ||| |||    
T  25784925 aaggtgtttgagaaatgtttcccgacccaagaatctcacctaaaa-acactcaacttttagactctaagttccttaaaagttctctcatctagtttttca 25785023  T
Q  261 agattctctctcttaaaactactaaaaaa 289  Q
    | ||||| |||||| || | |||||||||    
T  25785024 atattctttctcttgaagccactaaaaaa 25785052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 33030920 - 33030854
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaa 110  Q
    |||||||||| | ||||||||| |||||||| || ||||||| | || |||||||||||||||||||    
T  33030920 aaagaacaaaacataatttctacccatttttcaagtcactcacactctcaatgaatcctaagagaaa 33030854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 3651617 - 3651689
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaacaaga 116  Q
    |||||||||||| ||||||||| |||||||| || |||||||||     |||||||||||||| |||||||||    
T  3651617 aaagaacaaaccctaatttctacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaaga 3651689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 28832387 - 28832443
Alignment:
Q  57 taatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    ||||||||| |||||||| | ||||| || | || ||||||||||||||||||||||    
T  28832387 taatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaaca 28832443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 35397626 - 35397694
Alignment:
Q  42 ataaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaa 111  Q
    ||||||||||||||| ||||||||||||||||| || |||| || | || ||||||||||||||||||||    
T  35397626 ataaagaacaaacct-aatttctatccatttttcaagtcacccacaatctcaatgaatcctaagagaaaa 35397694  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 44732088 - 44732140
Alignment:
Q  64 tatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaacaaga 116  Q
    |||| |||||||||||||||||||  | |||||||||||||||||||||||||    
T  44732088 tatctattttttaaatcactcaaacccacaatgaatcctaagagaaaacaaga 44732140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 28770754 - 28770685
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    |||||||||||  ||||||||| |||||||| || |||  || | |||||||||||||||||||||||||    
T  28770754 aaagaacaaactctaatttctacccatttttcaagtcatacacactcgcaatgaatcctaagagaaaaca 28770685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 2869659 - 2869603
Alignment:
Q  57 taatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    ||||||||| |||||||| || |||| || | || ||||||||||||||||||||||    
T  2869659 taatttctacccatttttcaagtcacccacactctcaatgaatcctaagagaaaaca 2869603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 918460 - 918389
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatc-actcaaagtcgcaatgaatcctaagagaaaacaa 114  Q
    |||||||||||| ||||||||| |||||||| || || |||||||  | |||||||||||||||||||||||    
T  918460 aaagaacaaaccataatttctacccatttttcaattccactcaaacccacaatgaatcctaagagaaaacaa 918389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 6068340 - 6068290
Alignment:
Q  202 caaagacactcaacttttagcctttaagttccctcaaagttttctcatttg 252  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||| ||||    
T  6068340 caaagaccctcaacttttagcctttaagttccctaaaagttctctcctttg 6068290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 35109517 - 35109450
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaa 111  Q
    |||||||||||||||||||||| ||| |||| || |||| || | || |||||||||||| |||||||    
T  35109517 aaagaacaaaccttaatttctacccaattttcaagtcacacacactcacaatgaatcctacgagaaaa 35109450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 32736978 - 32736908
Alignment:
Q  42 ataaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaac 112  Q
    |||||||||||||| ||||||||| |||||||| || |||   | | || |||||||||||||||||||||    
T  32736978 ataaagaacaaaccctaatttctacccatttttcaagtcatcgacactcacaatgaatcctaagagaaaac 32736908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 17345499 - 17345430
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    |||||||||| | ||||||||| ||||||||||| |||| || | ||  |||||||| ||||||||||||    
T  17345499 aaagaacaaaacctaatttctacccattttttaagtcacccacactcttaatgaatcttaagagaaaaca 17345430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 32889570 - 32889626
Alignment:
Q  57 taatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    ||||||||| |||||||| | ||||| || | || ||||||||||||||||||||||    
T  32889570 taatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaaca 32889626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 9054817 - 9054748
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    ||||||||||   ||||||||| |||||||| || ||||||| | || ||||||||||||||||||||||    
T  9054817 aaagaacaaaatctaatttctacccatttttcaagtcactcacactctcaatgaatcctaagagaaaaca 9054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 6366636 - 6366692
Alignment:
Q  58 aatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaacaa 114  Q
    |||||||||||| |||| || ||||||||| |  |||||||||||||||||||||||    
T  6366636 aatttctatccacttttcaattcactcaaactaacaatgaatcctaagagaaaacaa 6366692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 11772235 - 11772307
Alignment:
Q  259 caagattctctctcttaaaactactaaaaaattgaagattgaaagcttttatagtacccagacccaggcaaaa 331  Q
    |||||||||||||||| || | ||||||||| |||||| | ||  ||| ||||||| ||||||||||||||||    
T  11772235 caagattctctctcttgaagcgactaaaaaaatgaagaataaagtcttatatagtatccagacccaggcaaaa 11772307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 3051237 - 3051303
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaa 110  Q
    |||||||||| ||||||||||| |||||||| |  ||||| | | || |||||||||||||||||||    
T  3051237 aaagaacaaaacttaatttctacccatttttcatgtcacttacactctcaatgaatcctaagagaaa 3051303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 37043786 - 37043883
Alignment:
Q  139 ctctgatgagatctgactatcaaaggtgtttgtgaattgtttcacaatccaagaatctcacctcaaagacactcaacttttagcctttaagttccctca 237  Q
    |||| |||| |||| || ||| ||||||||||| || |||||  |  |||||||||||||| |||||||||||||||  |||| || ||||||||||||    
T  37043786 ctctaatgaaatctcaccatccaaggtgtttgtcaagtgttttccggtccaagaatctcac-tcaaagacactcaacccttagactctaagttccctca 37043883  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 19752360 - 19752304
Alignment:
Q  57 taatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    ||||||||| |||||||| | ||||| || | || ||||||||||||||||||||||    
T  19752360 taatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaaca 19752304  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 31936695 - 31936763
Alignment:
Q  45 aagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    ||||||||| | ||||||||| |||||||| | ||||| || | || ||||||||||||||||||||||    
T  31936695 aagaacaaatcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaaca 31936763  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 1115080 - 1115015
Alignment:
Q  48 aacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    |||||||| |||||||||||||||||| || |||| || | || ||||||||  ||||||||||||    
T  1115080 aacaaaccctaatttctatccatttttcaagtcacccacactcacaatgaatattaagagaaaaca 1115015  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 37387632 - 37387701
Alignment:
Q  144 atgagatctgactatcaaaggtgtttgtgaattgtttcacaatccaagaatctcacctcaaagacactcaa 214  Q
    ||||||||| || ||| |||||||||||||| |||||| ||| ||||||||  |||| |||||||||||||    
T  37387632 atgagatctcaccatcgaaggtgtttgtgaagtgtttcccaacccaagaattccacc-caaagacactcaa 37387701  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 1417460 - 1417391
Alignment:
Q  44 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 113  Q
    |||||||||  | ||||||||| |||||||| | ||||| || | || ||||||||||||||||||||||    
T  1417460 aaagaacaagtcctaatttctacccatttttcatatcacccacactcccaatgaatcctaagagaaaaca 1417391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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