View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_low_12 (Length: 376)
Name: NF1639_low_12
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 359
Target Start/End: Complemental strand, 36686987 - 36686631
Alignment:
| Q |
4 |
tcatgggaagttcagatttcgtcatccatggaagcaatacttaaagattgggaacttggcacgaatttgtgcttacaaaattgaagcacttagtctatac |
103 |
Q |
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| T |
36686987 |
tcatggcaagttcagatttcgtcatccatggaagcaatacttaaagattgggaacttggcacgaatttgtgcttacaaaattgaagcacttagtctatac |
36686888 |
T |
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| Q |
104 |
ctcatcaattccaaagtatggtattctannnnnnnnnnnnatacatataattttagctccctaaagcatgttactttagggttcagatgggccacgatcc |
203 |
Q |
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| T |
36686887 |
ctcatcaattccaaagtatggtattctatttt---------tacatataattttagctccctaaa-catgttactttagggtttagatgggccacgaccc |
36686798 |
T |
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| Q |
204 |
acc------cnnnnnnnnnnnnnctaaaatatccctcttccatccgaactgaaattatacacagactaaacattgcgattaaccttat-----tttattt |
292 |
Q |
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| T |
36686797 |
accaaaaaaaaaaaaaaaaattactaaaatatccctcttccatccgaactcaaattatacactgactaaacattgcgattaaccttattttaatttattt |
36686698 |
T |
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| Q |
293 |
tcttatttcaacagaccccatatgaatttcgaagcaggattcaagaatcatgcacaaatattagctt |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36686697 |
tcttatttcaacagaccccatatgaatttcgaagcaggattcaagaatcatgcacaaatattagctt |
36686631 |
T |
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