View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1639_low_14 (Length: 372)
Name: NF1639_low_14
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_14 |
 | |
|
| [»] scaffold0121 (1 HSPs) |
| | |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 775916 - 776267
Alignment:
| Q |
1 |
tcaactacactatgtttattattttgttatcaattatgttatgaaatatggctatgtaatcacgagatcagattaaaggttggagcattagtgatacttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
775916 |
tcaactacactatgtttattattttgttatcaattatgttatgaaatatggctatgtaatcacgagatcagattaaaggttagagcattagtgatgcttt |
776015 |
T |
|
| Q |
101 |
tgaggaatgttgatnnnnnnnnttatgattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttgga |
200 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
776016 |
tgaggaatgttgataaaaaaatttaggattatgcaatggaacaagattaatcataactaggatgggaaagtttgtgcttgaaagaaaagtgatatttgga |
776115 |
T |
|
| Q |
201 |
agtaatgttggtgagaaagtttttatgctcaggttatctcttttattgtttaacattaattttcctttcaagttttaaagaagacaattccccttaactg |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||| |||||| |||||||| | | ||| ||| |
|
|
| T |
776116 |
agtaatgttggtgagaaagtttttatactcaagttatctctttcattgtttaacattaatattccttttaagtttcaaagaaga-----ctcgttagctg |
776210 |
T |
|
| Q |
301 |
ttttgttttgtggcaatgtctattaatatgagtcaaggacaatcgcctaaaacagtt |
357 |
Q |
| |
|
|||| |||| | ||||||||||||||| ||||||||| ||||| ||||||| |||| |
|
|
| T |
776211 |
ttttatttttttacaatgtctattaataagagtcaagggcaatcacctaaaaaagtt |
776267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 87 - 357
Target Start/End: Complemental strand, 32813091 - 32812819
Alignment:
| Q |
87 |
attagtgatacttttgaggaatgttgatnnnnnnnn-ttatgattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaagga |
185 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32813091 |
attagtgatgcttttgaggaatgttgatgaaaaaaaattaggattatgcaatggaacaagattaatcataactaggatgggaaagtttgtgcttgaagga |
32812992 |
T |
|
| Q |
186 |
aaagtgatatttggaagtaatgttggtgagaaagtttttatgctcaggttatctcttttattgtttaacattaattttcctttcaagttttaaagaagac |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
32812991 |
aaagtgatatttggaagtaatgttggtgagaaagtttttatactcaggttatctctttcattgtttaatattaatattcctttcaagttttaaagaagac |
32812892 |
T |
|
| Q |
286 |
aattccccttaactgttttg-ttttgtggcaatgtctattaatatgagtcaaggacaatcgcctaaaacagtt |
357 |
Q |
| |
|
||||||| ||| |||||||| |||| | |||||||||||||||| ||||||||| ||||| ||||||| |||| |
|
|
| T |
32812891 |
aattcccgttagctgttttgttttttttgcaatgtctattaataagagtcaagggcaatcacctaaaaaagtt |
32812819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 32813936 - 32813862
Alignment:
| Q |
18 |
attattttgttatcaattatgttatgaaatatggctatgtaatcacgagatcagattaaaggttggagcattagt |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32813936 |
attattttgttatcaattatgttatgaaatatggctatgtaatcacgagatcagattaaaggttgtagcattagt |
32813862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 289
Target Start/End: Complemental strand, 29693555 - 29693394
Alignment:
| Q |
127 |
gattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttggaagtaatgttggtgagaaagtttttat |
226 |
Q |
| |
|
||||||||||||||||||| ||||||||| || || |||| |||||| |||||||||||||||||| |||||||||| |||||||||||||| || |
|
|
| T |
29693555 |
gattatgcaatggaacaaggctaatcataaccagagtgagaaaatttgtgtttgaaggaaaagtgatatctggaagtaatactggtgagaaagtttccat |
29693456 |
T |
|
| Q |
227 |
gctcaggttatctcttttattgtttaacattaattttcctttcaagttttaaagaagacaatt |
289 |
Q |
| |
|
| |||||||||||||| | || | || |||| |||||||||||||| || |||||||||| |
|
|
| T |
29693455 |
acccaggttatctctttca-cgtctgacgttaaaattcctttcaagtttcaacgaagacaatt |
29693394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 9652397 - 9652433
Alignment:
| Q |
159 |
aggatgggaaagtttgtgcttgaaggaaaagtgatat |
195 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9652397 |
aggatgggtaagtttgtgcttgaaggaaaagtgatat |
9652433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 29679549 - 29679460
Alignment:
| Q |
200 |
aagtaatgttggtgagaaagtttttatgctcaggttatctcttttattgtttaacattaattttcctttcaagttttaaagaagacaatt |
289 |
Q |
| |
|
||||||| |||||||||||||||| || | |||||||||||||| | || | || |||| |||||||||||||| || ||||| |||| |
|
|
| T |
29679549 |
aagtaatattggtgagaaagttttcatacccaggttatctctttcaccgtctgacgttaaaattcctttcaagtttcaacgaagaaaatt |
29679460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 43731778 - 43731709
Alignment:
| Q |
127 |
gattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatt |
196 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||| |||| || ||||||||||||||||| || ||||| |
|
|
| T |
43731778 |
gattatgcaatgacacaagactaatcataactagaatggataaatttgtgcttgaaggaaaggtcatatt |
43731709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 289
Target Start/End: Complemental strand, 34417330 - 34417168
Alignment:
| Q |
127 |
gattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttggaagtaatgttggtgagaaagtttttat |
226 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||| |||||||| ||||| |||||||||| || || | |||||||||| |||| || ||||| || || |
|
|
| T |
34417330 |
gattatgcaacggaacaaggttaatcataactagaatgggaaaatttgttcttgaaggaagggttatttctggaagtaatattggcgaaaaagtgttcat |
34417231 |
T |
|
| Q |
227 |
gctcaggttatctcttttattgtttaacattaattttcctttcaagttttaaagaagacaatt |
289 |
Q |
| |
|
| |||||||||||||| | || | | ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
34417230 |
acccaggttatctctttcaccgtctgatattaaaattcctttcaagtttcaaagaagacaatt |
34417168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 4649319 - 4649220
Alignment:
| Q |
127 |
gattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttggaagtaatgttggtgagaaagtttttat |
226 |
Q |
| |
|
|||||||||||| |||||| ||||| ||| | ||||| || ||||||||||||||||| || |||| |||||| ||| | |||||||| |||||||| |
|
|
| T |
4649319 |
gattatgcaatgacacaagactaatcgtaaccataatgggtaaatttgtgcttgaaggaaaggtcatatctggaagcaatataggtgagaacgtttttat |
4649220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 8498272 - 8498157
Alignment:
| Q |
127 |
gattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttggaagtaatgttggtgagaaagtttttat |
226 |
Q |
| |
|
||||||||||||||||||| |||| ||||| ||| ||| ||| ||||| ||||||| ||| || |||| ||||||||| | || || |||||||| || |
|
|
| T |
8498272 |
gattatgcaatggaacaaggttaaccataactagaatgaaaaaatttgtacttgaagcaaaggttatatctggaagtaacatcggcgaaaaagttttcat |
8498173 |
T |
|
| Q |
227 |
gctcaggttatctctt |
242 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
8498172 |
acccaagttatctctt |
8498157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 26626639 - 26626561
Alignment:
| Q |
127 |
gattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttggaagtaa |
205 |
Q |
| |
|
||||||||||||||||||| |||||||||| || |||||||| ||||||||||||| || || |||| ||||||||| |
|
|
| T |
26626639 |
gattatgcaatggaacaaggttaatcataaccagaatgggaaaatttgtgcttgaagctaaggttatatctggaagtaa |
26626561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 289
Target Start/End: Complemental strand, 50938864 - 50938705
Alignment:
| Q |
130 |
tatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttggaagtaatgttggtgagaaagtttttatgct |
229 |
Q |
| |
|
|||||||||||||||| |||| ||||| | |||||||| ||||| ||||||| ||| || |||| ||||||||| | || || |||||||| || | |
|
|
| T |
50938864 |
tatgcaatggaacaaggttaaccataaccataatgggaaaatttgttcttgaagcaaaggttatatatggaagtaacatcggcgaaaaagttttcatacc |
50938765 |
T |
|
| Q |
230 |
caggttatctcttttattgtttaacattaattttcctttcaagttttaaagaagacaatt |
289 |
Q |
| |
|
||||||||||||| | || | | ||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
50938764 |
caggttatctcttcaaccgtctgatattaaaattcctttcaaattttagagaagacaatt |
50938705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 47507516 - 47507613
Alignment:
| Q |
129 |
ttatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttggaagtaatgttggtgagaaagtttttat |
226 |
Q |
| |
|
||||||||||| |||||| |||| ||||| | |||||| || |||||| |||||||||| | |||| | |||||||| | || |||||||||||||| |
|
|
| T |
47507516 |
ttatgcaatggtacaagactaataataatcatgatgggtaaatttgtgtttgaaggaaatctcatatctcgaagtaatataggcgagaaagtttttat |
47507613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 49200563 - 49200511
Alignment:
| Q |
129 |
ttatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttga |
181 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||| |||||||| | ||||||||| |
|
|
| T |
49200563 |
ttattcaatggaacaaggttaatcataactagaatgggaaaatatgtgcttga |
49200511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 25283 - 25358
Alignment:
| Q |
127 |
gattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttggaag |
202 |
Q |
| |
|
||||||||||||| |||||| ||||||| | ||| ||||| || ||||||||||||||||| || |||||| |||| |
|
|
| T |
25283 |
gattatgcaatggcacaagactaatcattactagaatgggtaaatttgtgcttgaaggaaatgtcatatttcgaag |
25358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 7799 - 7683
Alignment:
| Q |
129 |
ttatgcaatggaacaagattaatcataatta---ggatgggaaagtttgtgcttgaaggaaaagtgatatttggaagtaatgttggtgagaaagttttta |
225 |
Q |
| |
|
||||||||||| |||||| |||| ||||| | ||||| | || ||||||||||||||||| | |||| |||||||||| | || ||||||||||||| |
|
|
| T |
7799 |
ttatgcaatggtacaagactaataataataaccaggatgagtaaatttgtgcttgaaggaaatgccatatctggaagtaatataggcgagaaagttttta |
7700 |
T |
|
| Q |
226 |
tgctcaggttatctctt |
242 |
Q |
| |
|
| || || ||||||||| |
|
|
| T |
7699 |
tactaagattatctctt |
7683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 31226467 - 31226545
Alignment:
| Q |
127 |
gattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttggaagtaa |
205 |
Q |
| |
|
||||||||||||| |||||| |||| |||| ||||||| ||| |||||||| || ||||||||||||| | ||||||| |
|
|
| T |
31226467 |
gattatgcaatgggacaagactaattataacaaggatggaaaaatttgtgctagagggaaaagtgatatctagaagtaa |
31226545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 9361678 - 9361757
Alignment:
| Q |
127 |
gattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttggaagtaat |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||||||| ||| ||||||||||| || |||| |||||||||| |
|
|
| T |
9361678 |
gattatgcaatggaacaaggctaatcataactataatgggaaaatttaatcttgaaggaaaggttatatctggaagtaat |
9361757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 336 - 237
Alignment:
| Q |
127 |
gattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttggaagtaatgttggtgagaaagtttttat |
226 |
Q |
| |
|
|||||||||||| |||||| ||||| ||| | ||||| || ||||||||||||||||| || |||| |||||| ||| | |||||||| |||||||| |
|
|
| T |
336 |
gattatgcaatgacacaagactaatcgtaaccataatgggtaaatttgtgcttgaaggaaaggtcatatctggaagcaatataggtgagaacgtttttat |
237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 5337644 - 5337719
Alignment:
| Q |
127 |
gattatgcaatggaacaagattaatcataattaggatgggaaagtttgtgcttgaaggaaaagtgatatttggaag |
202 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||| || || || ||| ||||||||||||| || |||||| |||| |
|
|
| T |
5337644 |
gattatgcaatggcacaagactaatcataactagaattggtaaatttatgcttgaaggaaaggtcatatttcgaag |
5337719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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