View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1639_low_16 (Length: 356)
Name: NF1639_low_16
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 336
Target Start/End: Complemental strand, 15581291 - 15580962
Alignment:
| Q |
7 |
tccaagaatatactattatcttatctagcacattgtttcaaccaaatattatttacataccaaaatgagttcaagaaataatcataataatttgggatat |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15581291 |
tccaaaaatatactattatcttatctagcacattgtttcaaccaaatattatttacataccaaaatgagttcaagaaataatcataataatttgggatat |
15581192 |
T |
|
| Q |
107 |
tcacaaaaaccttcagataagaaggattcgagagatcctactaagaaaagtccaatctcaaaccagattgatatggcctacaacaatggtcctcctcctg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15581191 |
tcacaaaaaccttcagataagaaggattcgagagatcctactaagaaaagtccaatctcaaaccagattgatatggcctacaacaatggtcctcctcctg |
15581092 |
T |
|
| Q |
207 |
tggcaaatactggaaatcttcctgcaaatcagaatcctttggctaaccaaatgaatattggttacaacacttgatatggccaacatgcaggtatatccag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15581091 |
tggcaaatactggaaatcttcctgcaaatcagaatcctttggctaaccaaatgaatattggttacaacacttgatatggccaacatgcaggtatattgag |
15580992 |
T |
|
| Q |
307 |
aaactaggattgtatttgaattttcttaca |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15580991 |
aaactaggattgtatttgaattttcttaca |
15580962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 15549873 - 15549703
Alignment:
| Q |
27 |
ttatctagcacattgtttcaaccaaatatt-atttacataccaaaatgagttcaagaaataatcataataatttgggatattcacaaaaaccttcagata |
125 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
15549873 |
ttatctagcacattgtttcaacctaatatttacttacataccaaaatgagttcaagaaataatcataataatttgggacattcacaaaaactttcagata |
15549774 |
T |
|
| Q |
126 |
agaaggattcgagagatcctactaagaaaagtccaatctcaaaccagattgatatggcctacaacaatggt |
196 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
15549773 |
agaaggattcgagagaccctgctaagaatagtccaatcttaaaccagaaggatttggcctacaacaatggt |
15549703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University