View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_low_2 (Length: 597)
Name: NF1639_low_2
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 4 - 581
Target Start/End: Complemental strand, 6266032 - 6265460
Alignment:
| Q |
4 |
atgaagttaacaatgatgaaggaaacaaagaatgtgaaaatggtagtaatgatgtgattttggtagatttggatgaagaacatggtctagagagcaactc |
103 |
Q |
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| T |
6266032 |
atgaagttaacaatgatgaaggaaacaaagaatgtcaaaatggtagtaatgatgtgattttggttgatttggatgaagaacatggtctagagagcaattc |
6265933 |
T |
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| Q |
104 |
tagcagtagtgttatggagtcattgatggaattgccgattgaggaagtttcttcatgtgattgtactagtcgagatggaagtgaagtcgaagaggaaaag |
203 |
Q |
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| T |
6265932 |
tagcagtagtgttatggagtcatccatggaattgccgattgaggaagtttcttcatgtgattgtactagtcgagatggaagtgaagtcgaagaggaaaag |
6265833 |
T |
|
| Q |
204 |
gattcgagcagtgaaaattttgagaaacaagtttcagtattgccaatgccaggtatttcaacttattttattaagatttctgcaatgtcgtgattaatat |
303 |
Q |
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| T |
6265832 |
gattcgagcagtgaaaattttgagaaacaagtttcagtattgccaatgccaggtatttcaaattattttattaagatttctgcaattttgtgattaatat |
6265733 |
T |
|
| Q |
304 |
tttaacgctgcgacaaatcaaatttcataacacaacattggtgacctctactgctatttgacaccttggttgcagatacaatagcactagtataccgttt |
403 |
Q |
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| T |
6265732 |
tttaacgctgcgacaaattaaatttcataacacaacattggtgacctctactgctatttgacaccttggttgcagatacaat-----tagtataccgttt |
6265638 |
T |
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| Q |
404 |
tgaaaaccttgtttgcataattaatttatagtttttgcagtgaagtgctatgtatgataacttcaacaaaatatgatttttcattttattttgattatta |
503 |
Q |
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| T |
6265637 |
tgaaaaccttgtttgcataattaatttatagattttgcagtgaagtgctatgtatgatgagttcaacagaatatgttttttaattttattttgattatta |
6265538 |
T |
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| Q |
504 |
gtgctagagattgagatgatgaaggagaggtttgcaaaattgttacttggagaagatatgtcaggttctggaaatggg |
581 |
Q |
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| T |
6265537 |
gtgctagagattgagatgatgaaggagaggtttgcaaaattgttacttggagaagatatgtcaggttctggaaatggg |
6265460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 508 - 581
Target Start/End: Complemental strand, 23783442 - 23783369
Alignment:
| Q |
508 |
tagagattgagatgatgaaggagaggtttgcaaaattgttacttggagaagatatgtcaggttctggaaatggg |
581 |
Q |
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| T |
23783442 |
tagagattgagatgatgaaggagaggtttgcaaagttgttacttggagaagatatgtcaggttgtggaaatggg |
23783369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 514 - 577
Target Start/End: Complemental strand, 31130769 - 31130706
Alignment:
| Q |
514 |
ttgagatgatgaaggagaggtttgcaaaattgttacttggagaagatatgtcaggttctggaaa |
577 |
Q |
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| T |
31130769 |
ttgatatgatgaaggaaaggtttgcaaaattgttgcttggtgaagatatgtcaggttcaggaaa |
31130706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 577
Target Start/End: Complemental strand, 34865027 - 34864969
Alignment:
| Q |
519 |
atgatgaaggagaggtttgcaaaattgttacttggagaagatatgtcaggttctggaaa |
577 |
Q |
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||||||||||| ||||||||||| || | ||||| |||||||||||||| |||||||| |
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| T |
34865027 |
atgatgaaggaaaggtttgcaaagttactgcttggtgaagatatgtcagggtctggaaa |
34864969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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