View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_low_23 (Length: 287)
Name: NF1639_low_23
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 24881999 - 24881735
Alignment:
| Q |
10 |
attatactatgtacatatgataacatggaaaaccagtgaataagaagtccagatactcatattcttgaacttcttagagcaattattttgttctgacatg |
109 |
Q |
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| T |
24881999 |
attacactatgtacatatgataacatggaaaaccagtgaataagaagtccagatactcatattcttgaacttcttagagcaattattttgttctgacatg |
24881900 |
T |
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| Q |
110 |
tctgagttctttggccttggtattttctttgattcgcgtaagcaccgcgaggaaaaagaagcaccaaactgcaccatggagaatcgtgaaatgccacaat |
209 |
Q |
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| T |
24881899 |
tctgagttctttggccttggtattttctttgattcgcgtaagcaccgcgaggaaaaagaagcaccaaactgcaccatggagaatcgtgaagtgccacaat |
24881800 |
T |
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| Q |
210 |
gcaccatggccaatcgtgaagcaccacatgaagagatgagggaagtgcaaagctaagggacaaaa |
274 |
Q |
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| T |
24881799 |
gcaccatggccaatcgtgaagcaccacatgaagagatgagggaagtgcaaagcgaagggacaaaa |
24881735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 25714144 - 25714224
Alignment:
| Q |
55 |
agtccagatactcatattcttgaacttcttagagcaattattttgttctgacatgtctgagttctttggccttggtatttt |
135 |
Q |
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|||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
25714144 |
agtccatatactcagattcttgaacttcttagagcactaattttgttctgacatgtctgagttctctggcctttgtatttt |
25714224 |
T |
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