View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_low_24 (Length: 284)
Name: NF1639_low_24
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 32 - 276
Target Start/End: Original strand, 30897768 - 30898013
Alignment:
| Q |
32 |
gttgagaggagctagttgaaaatgttgaaccgtgtggtattaattatactaattattagtatatatcgtcatgtttggttgggttgtcttccacaattca |
131 |
Q |
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| T |
30897768 |
gttgagaggagctagttgaaaatgttgaaccgtgtggtattaattatactaattattagtatatatcgtcatgtttggttgggttgtcttccacaattca |
30897867 |
T |
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| Q |
132 |
agaccttaagaaagccagacctttattttatcgttttgttattattccaccaccctctaaattctga-tttatcatttggtttgttttgtctagattcgt |
230 |
Q |
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| T |
30897868 |
agacgttaagaaagccagacctttattttatcgttttgttattattccaccaccctctaaattctgattttatcatttggtttgttttgtctagattcgt |
30897967 |
T |
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| Q |
231 |
gcaattcattgnnnnnnnaattcacaagatttatttgaagtataat |
276 |
Q |
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| T |
30897968 |
gcaattcattgtttttttaattcacaagatttatttgaagtataat |
30898013 |
T |
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