View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_low_25 (Length: 273)
Name: NF1639_low_25
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 3262451 - 3262246
Alignment:
| Q |
19 |
tgggtaaattatactcacctccctcaagctatgttaatatatcacttacatcccctcaattttaacaaataactctaaccacccttcactatgacagtgt |
118 |
Q |
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| T |
3262451 |
tgggtaaattacactcacctcccttgaggtatgttaatttatcacttacatcccctcaattttaacaaataactctaaccacccttcactatgacagtgt |
3262352 |
T |
|
| Q |
119 |
taaaagtggcgttaaataatgtctgcacttcttccaccaaaacgatttcattaaccaaatttgatatattccctttgtgcctcgttcgtgaacgaaagtg |
218 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3262351 |
taaa-gtggcgttaaacaatgtctgcacttcttccaccaaaatgatttcattaaccaaatttggtatattccctttgtgcctcgttcgtgaacgaaagtg |
3262253 |
T |
|
| Q |
219 |
atgctgc |
225 |
Q |
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|||||| |
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| T |
3262252 |
gtgctgc |
3262246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 745810 - 746031
Alignment:
| Q |
22 |
gtaaattatactcacctccctcaagctatgttaatatatcacttacatcccctcaattttaacaaataactctaaccacccttcactatgacagtgttaa |
121 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
745810 |
gtaaattacactcacctccctcaaagtatgttaatatatcacttacaccccctcgattttaacaaataacactaacctcccttcactatgatggtgttaa |
745909 |
T |
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| Q |
122 |
aagtggcgttaaataat---------------------gtctgcacttcttccaccaaaacgatttcattaaccaaatttgatatattccctttgtgcct |
200 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |
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| T |
745910 |
aa-tggcgttaaataataaaagaaaaactcaaactttagtctgcacttcttccaccaaaacgatttcatcaaccaaatttggtctattccctttgtgcct |
746008 |
T |
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| Q |
201 |
cgttcgtgaacgaaagtgatgct |
223 |
Q |
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||||||||| ||||||| |||| |
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| T |
746009 |
tgttcgtgaatgaaagtggtgct |
746031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 42331694 - 42331624
Alignment:
| Q |
52 |
ttaatatatcacttacatcccctcaattttaacaaataactctaaccacccttcactatgacagtgttaaa |
122 |
Q |
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||||||| ||||||||| |||||| ||||| ||||||||| |||||| ||||| | | | ||||||||||| |
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| T |
42331694 |
ttaatatgtcacttacaccccctctattttcacaaataacactaacctccctttaatgtaacagtgttaaa |
42331624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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