View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1639_low_28 (Length: 255)
Name: NF1639_low_28
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 31870025 - 31870249
Alignment:
| Q |
16 |
ttttgttgttaagttacttttcagcacaaatcaatttacttcaaactccttttaactaaaatcaaaattaactaaaacaaaaaccaagattaagcagggt |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870025 |
ttttgttgttaagttacttttcaacacaaatcaatttacttcaaactccttttaactaaaatcaaaattaactaaaacaaaaaccaagattaagcagggt |
31870124 |
T |
|
| Q |
116 |
cacctttgaatcctctttaaggtttgtggattaatctcagcctgtgtaggaggacccatcctcttcttcataatctcattaccccatttcaacctatcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870125 |
cacctttgaatcctctttaaggtttgtggattaatctcagcctgtgtaggaggacccatcttcttcttcataatctcattaccccatttcaacctatcaa |
31870224 |
T |
|
| Q |
216 |
cagtaacatccccacaccacaaaat |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31870225 |
cagtaacatccccacaccacaaaat |
31870249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 8851693 - 8851624
Alignment:
| Q |
171 |
ccatcctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaat |
240 |
Q |
| |
|
||||||| |||||||||| || ||| ||||||| ||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
8851693 |
ccatccttttcttcataacctgattcccccattgcaacctatccatagtaacatcaccacaccacaaaat |
8851624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 27878304 - 27878369
Alignment:
| Q |
175 |
cctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaat |
240 |
Q |
| |
|
|||||||||||| | |||| |||||||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
27878304 |
cctcttcttcatgaaatcatcaccccatttcaatctatcaacagtaacatcaccgcaccacaaaat |
27878369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University