View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_low_3 (Length: 577)
Name: NF1639_low_3
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 13 - 565
Target Start/End: Original strand, 36283718 - 36284269
Alignment:
| Q |
13 |
aaggcgagtagttatgcggttgagaatttgaacaaattgaaagaagcgcgtattggtatctattttgatcatgaaaataaagaagtaaaacaaaatatat |
112 |
Q |
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| T |
36283718 |
aaggcgagtaattatgaggttgagaatttgaacaaattgaaagaagcacgtattggtatctattttgatcatgaaaataaagaagtaaaacaaaatatat |
36283817 |
T |
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| Q |
113 |
caaatctcttcaatggcattcataaaaccaggtttctttgcttagatatggattccacagaggtaaaagccctatttaccgatatttttaatataggaat |
212 |
Q |
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| T |
36283818 |
caaatctcctcaatggcattcataaaaccaggtttctttgcttagatatggattccacagaggtaagagccctatttaccgatatttttaatataggaat |
36283917 |
T |
|
| Q |
213 |
attgtgtgttatttttcataactcttttgttatttttatccatgttgcaggtgcttacttatgcttgtctagaatttccaacatttaacaatttgggtta |
312 |
Q |
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| T |
36283918 |
--tgtgtcttatttttcataactcttttgttatttttatccatgttgcaggtgcttacttatgcttgtctagaatttccaacatttaacaatttgggtta |
36284015 |
T |
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| Q |
313 |
tctacaattatatttaaaaacctttaactcacattttctagttaaactgttactagaaaaatgccccaatcttgatgttcttgagattattaaggttggt |
412 |
Q |
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| T |
36284016 |
tctacaattatatttaaaaacctttaactcacattttctagttaaactgttactagaaaaatgccccaatcttgatgttcttgagattattaaggttggt |
36284115 |
T |
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| Q |
413 |
ttactcttgagatttggttaattatcggttaacttttttaatttactttctttttctcaagacaa-tatagatgttttgtgatctcttttgacaggttga |
511 |
Q |
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| T |
36284116 |
ttactcttgagatttggttaattatcggttaacttttttaatttactttctttttctcatgacaattatagatgttttgtgatctcttttgacaggttga |
36284215 |
T |
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| Q |
512 |
tgacctatgcgataatgaaattaaatgggcagaaccaacaatagttcctagctg |
565 |
Q |
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| T |
36284216 |
tgacctatgcgataatgaaattaaatgggcagaaccaacaatagttcctagctg |
36284269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 197 - 565
Target Start/End: Original strand, 34554768 - 34555133
Alignment:
| Q |
197 |
tttttaatataggaatattgtgtgttatttttcataactcttttgttatttttatccatgttgcaggtgcttacttatgcttgtctagaatttccaacat |
296 |
Q |
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| T |
34554768 |
tttttagtataggaat--tgtatgttatttctcataattcttt-gttatttttatccac-ttgcaggtgcttacttatgcttgtctagaatttccaacat |
34554863 |
T |
|
| Q |
297 |
ttaacaatttgggttatctacaattatatttaaaaacctttaactcacattttctagttaaactgttactagaaaaatgccccaatcttgatgttcttga |
396 |
Q |
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| T |
34554864 |
ttgatcatttgggtcatctacaattatatttaaaaatccttgattcatattttctagttgagttgttgctagaaaaatgccccaatctagaatttctaga |
34554963 |
T |
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| Q |
397 |
gattattaaggttggtttactcttgagatttggttaattatcggttaacttttttaatttactttctttttctcaagacaa-tatagatgttttgtgatc |
495 |
Q |
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| T |
34554964 |
gattatcaaggttagttaactcttgagatttagctaattatttcttgaatttttatttttactttgtttcattggatacaattatagttgtgttgtgacc |
34555063 |
T |
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| Q |
496 |
tcttttgacaggttgatgacctatgcgataatgaaattaaatgggcagaaccaacaatagttcctagctg |
565 |
Q |
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| T |
34555064 |
tcacttgacaggttgatgaactatgtgataatgaaattgaatggagacaaccaacaatagttcctagctg |
34555133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 34554472 - 34554624
Alignment:
| Q |
25 |
tatgcggttgagaatttgaacaaattgaaagaagcgcgtattggtatctattttgatcatgaaaataaagaagtaaaacaaaatatatcaaatctcttca |
124 |
Q |
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|||| ||||||||||||| |||| ||||||||||| | |||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||| | |||| |
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| T |
34554472 |
tatgtggttgagaatttggacaatttgaaagaagcacatattggtatccattttgattatgaaaataaaaaagtaaaagaaaatatagcaaatattttca |
34554571 |
T |
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| Q |
125 |
atggcattcataaaaccaggtttctttgcttagatatggattccacagaggta |
177 |
Q |
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|||| ||| ||||||||| ||||||||||||||| || || ||||||||||| |
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| T |
34554572 |
atggggttcgtaaaaccagatttctttgcttagatttgtataccacagaggta |
34554624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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