View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1639_low_31 (Length: 236)

Name: NF1639_low_31
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1639_low_31
NF1639_low_31
[»] chr3 (20 HSPs)
chr3 (18-236)||(775543-775758)
chr3 (18-127)||(32814231-32814340)
chr3 (146-236)||(32814105-32814196)
chr3 (143-236)||(30847022-30847115)
chr3 (143-207)||(39993149-39993213)
chr3 (143-218)||(36735094-36735169)
chr3 (145-207)||(24475638-24475700)
chr3 (143-218)||(19680702-19680777)
chr3 (143-218)||(30433936-30434011)
chr3 (151-218)||(38751468-38751535)
chr3 (142-236)||(12113327-12113420)
chr3 (143-207)||(47257580-47257643)
chr3 (146-213)||(45406508-45406575)
chr3 (143-205)||(18431002-18431064)
chr3 (143-207)||(1758035-1758099)
chr3 (143-203)||(21224020-21224080)
chr3 (143-206)||(35924917-35924980)
chr3 (141-207)||(54252456-54252522)
chr3 (150-218)||(30738774-30738843)
chr3 (143-207)||(54136885-54136949)
[»] chr4 (12 HSPs)
chr4 (143-218)||(29212610-29212685)
chr4 (143-236)||(50679832-50679924)
chr4 (143-218)||(24970039-24970114)
chr4 (143-213)||(180488-180558)
chr4 (143-212)||(25142258-25142327)
chr4 (143-206)||(24234881-24234944)
chr4 (143-218)||(35321550-35321625)
chr4 (143-218)||(51717718-51717793)
chr4 (159-207)||(42746745-42746793)
chr4 (150-218)||(49491827-49491895)
chr4 (143-218)||(19300200-19300275)
chr4 (143-180)||(49031016-49031053)
[»] chr5 (16 HSPs)
chr5 (145-236)||(36080583-36080674)
chr5 (143-204)||(35286021-35286082)
chr5 (143-218)||(394367-394442)
chr5 (143-213)||(25825071-25825141)
chr5 (144-206)||(42522132-42522194)
chr5 (151-218)||(6812587-6812654)
chr5 (143-218)||(15834861-15834936)
chr5 (143-218)||(7861386-7861461)
chr5 (143-205)||(5841327-5841389)
chr5 (143-205)||(13146164-13146226)
chr5 (143-204)||(9771858-9771919)
chr5 (143-223)||(12220217-12220295)
chr5 (143-207)||(32270429-32270493)
chr5 (143-218)||(11658008-11658083)
chr5 (143-218)||(36977420-36977495)
chr5 (142-212)||(43583504-43583574)
[»] chr2 (14 HSPs)
chr2 (143-213)||(42461045-42461115)
chr2 (146-223)||(7634747-7634824)
chr2 (143-236)||(41670088-41670181)
chr2 (143-218)||(21647078-21647153)
chr2 (143-213)||(3436410-3436480)
chr2 (143-236)||(41399140-41399233)
chr2 (143-223)||(32493547-32493627)
chr2 (143-218)||(14660673-14660748)
chr2 (143-205)||(6201417-6201479)
chr2 (143-207)||(5997869-5997933)
chr2 (143-206)||(27330569-27330632)
chr2 (143-218)||(39952135-39952210)
chr2 (164-218)||(33891666-33891720)
chr2 (150-206)||(9621052-9621108)
[»] chr1 (12 HSPs)
chr1 (146-236)||(12628709-12628799)
chr1 (143-227)||(15802050-15802134)
chr1 (143-206)||(46284122-46284185)
chr1 (152-207)||(52019682-52019737)
chr1 (148-230)||(33015274-33015355)
chr1 (141-205)||(36700099-36700163)
chr1 (141-205)||(36716203-36716267)
chr1 (143-207)||(41812008-41812072)
chr1 (143-218)||(12880305-12880380)
chr1 (143-205)||(51161810-51161872)
chr1 (143-213)||(52042688-52042758)
chr1 (146-218)||(6492387-6492459)
[»] chr7 (14 HSPs)
chr7 (143-236)||(28606130-28606222)
chr7 (143-236)||(37597289-37597382)
chr7 (151-207)||(7635914-7635970)
chr7 (151-218)||(28919052-28919119)
chr7 (142-216)||(5038636-5038710)
chr7 (146-207)||(29781977-29782037)
chr7 (143-207)||(37668609-37668673)
chr7 (143-218)||(12392134-12392209)
chr7 (143-218)||(12407999-12408074)
chr7 (151-205)||(5277728-5277782)
chr7 (151-213)||(13953710-13953772)
chr7 (159-213)||(13954341-13954395)
chr7 (147-205)||(45234599-45234657)
chr7 (142-218)||(39679165-39679241)
[»] scaffold1505 (1 HSPs)
scaffold1505 (143-207)||(864-928)
[»] chr8 (16 HSPs)
chr8 (143-218)||(21511646-21511721)
chr8 (143-236)||(2179215-2179307)
chr8 (143-207)||(12177860-12177924)
chr8 (143-207)||(12422288-12422352)
chr8 (143-218)||(5967350-5967425)
chr8 (143-218)||(33561981-33562056)
chr8 (143-218)||(41844862-41844937)
chr8 (146-236)||(45364230-45364319)
chr8 (143-236)||(32821621-32821713)
chr8 (143-207)||(32178320-32178384)
chr8 (161-213)||(44400451-44400503)
chr8 (142-236)||(788674-788766)
chr8 (142-212)||(775373-775443)
chr8 (142-212)||(781027-781097)
chr8 (143-197)||(25328695-25328749)
chr8 (147-213)||(31801272-31801338)
[»] chr6 (10 HSPs)
chr6 (143-230)||(17186758-17186845)
chr6 (143-212)||(12158980-12159049)
chr6 (144-224)||(15584285-15584365)
chr6 (143-207)||(3579374-3579438)
chr6 (143-207)||(32804084-32804147)
chr6 (143-218)||(12650094-12650169)
chr6 (147-206)||(14529150-14529209)
chr6 (147-213)||(7793262-7793328)
chr6 (160-218)||(21955623-21955681)
chr6 (143-207)||(30792965-30793029)
[»] scaffold0027 (1 HSPs)
scaffold0027 (143-236)||(116668-116761)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 775543 - 775758
Alignment:
Q  18 gcatgaatgccattttgtttcctttaccatttttatactctatttgaccgtaaaaatgatttttataggtaccatctttttactataagttttataacag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  775543 gcatgaatgccattttgtttcctttaccatttttatactctatttgaccgtaaaaatgatttttataggtaccatctttttactataagttttataacag 775642  T
Q  118 attttttaaatnnnnnnnnnnncaattcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttt 217  Q
    |||||||   |           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  775643 atttttt---tttaaaaaaaaacaattcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttt 775739  T
Q  218 tctttaatactaagatttt 236  Q
    |||||||||||||||||||    
T  775740 tctttaatactaagatttt 775758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 32814340 - 32814231
Alignment:
Q  18 gcatgaatgccattttgtttcctttaccatttttatactctatttgaccgtaaaaatgatttttataggtaccatctttttactataagttttataacag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32814340 gcatgaatgccattttgtttcctttaccatttttatactctatttcaccgtaaaaatgatttttataggtaccatctttttactataagttttataacag 32814241  T
Q  118 attttttaaa 127  Q
    ||||||||||    
T  32814240 attttttaaa 32814231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 32814196 - 32814105
Alignment:
Q  146 aaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctat-aacttttctttaatactaagatttt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  32814196 aaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttactataaacttttctttaatactaagatttt 32814105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 30847115 - 30847022
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    ||||||||||||||| ||||||||| ||| ||||||||| | ||||||| ||||||||||||||| ||||| |||| ||| || |||| |||||    
T  30847115 ttcaaatgaaaaatttgtttgaataacttatcttaaaatgtcattctaagtatttcatcattttgttataattttttttttatgctaaaatttt 30847022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 39993149 - 39993213
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    |||||||||||||||||||| |||||||| ||||||||| | ||||||| |||||||||||||||    
T  39993149 ttcaaatgaaaaattggttttaatagcttatcttaaaatgtcattctaagtatttcatcattttg 39993213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 36735169 - 36735094
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||| ||||||  ||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| ||||    
T  36735169 ttcaaataaaaaatcagtttgaatagcttatcttaaaatgttattctagatatttcatcattttgttataaatttt 36735094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 24475700 - 24475638
Alignment:
Q  145 caaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||||||||| ||||||||||||| ||||||||  | |||||||||||||||||||||||    
T  24475700 caaatgaaaaattcgtttgaatagcttatcttaaaacgtcattctaaatatttcatcattttg 24475638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 19680702 - 19680777
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||||||||| |||||||||| || ||||||||| | ||| |||||||||| |||||||| ||||| ||||    
T  19680702 ttcaaatgaaaaatttgtttgaatagtttatcttaaaatgtcattttaaatatttcgtcattttgttataattttt 19680777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 30433936 - 30434011
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||| |||||||| |||||||||||| ||||||||| | ||| || |||||||||||||||| ||||| ||||    
T  30433936 ttcaaataaaaaattgatttgaatagcttatcttaaaatgtcattttagatatttcatcattttgttataattttt 30434011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 38751535 - 38751468
Alignment:
Q  151 aaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    |||||| |||||||||||||| ||||||||| | |||||| |||||||||||||||| ||||| ||||    
T  38751535 aaaaatcggtttgaatagcttatcttaaaatgtgattctagatatttcatcattttgttataattttt 38751468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 12113327 - 12113420
Alignment:
Q  142 attcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    |||||||||||||||   ||||||||| || ||||||||| | ||||||| ||||||||||||| | ||||| |||| ||||||||||| |||||    
T  12113327 attcaaatgaaaaatccatttgaatagtttatcttaaaatgtcattctaagtatttcatcatttggttataa-ttttttttaatactaaaatttt 12113420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 47257643 - 47257580
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    |||||||||||||||| ||||| ||| || ||||||||||| ||||||| |||||||||||||||    
T  47257643 ttcaaatgaaaaattg-tttgattagtttatcttaaaatataattctaagtatttcatcattttg 47257580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 45406575 - 45406508
Alignment:
Q  146 aaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataa 213  Q
    |||| ||||||| ||||||||||||| ||||||||||| ||| ||| ||||| ||||||||| |||||    
T  45406575 aaataaaaaattagtttgaatagcttatcttaaaatatcattgtaagtattttatcattttgttataa 45406508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 18431064 - 18431002
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattt 205  Q
    |||||| |||||||| ||||||| | ||| ||||||||| ||||||||| |||||||||||||    
T  18431064 ttcaaaagaaaaatttgtttgaaaaacttatcttaaaatgttattctaagtatttcatcattt 18431002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 1758099 - 1758035
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||||| |||||||||||||| | ||||| |||||| ||||| ||||||||| ||| |||||    
T  1758099 ttcaaatgataaattggtttgaattgtttctcataaaatgttattttaaatattttatccttttg 1758035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 21224020 - 21224080
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcat 203  Q
    |||||||||||| |  |||||||||| || ||||||||||| ||||||| |||||||||||    
T  21224020 ttcaaatgaaaattctgtttgaatagtttatcttaaaatatcattctaagtatttcatcat 21224080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 35924980 - 35924917
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcatttt 206  Q
    ||||||| ||||||  |||| |||| ||| ||||||||||| ||||||| ||||||||||||||    
T  35924980 ttcaaataaaaaatctgtttaaataacttatcttaaaatatcattctaagtatttcatcatttt 35924917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 54252522 - 54252456
Alignment:
Q  141 aattcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    |||||| |||||||||| |||||| |||||| ||||||||| | |||| || || ||||||||||||    
T  54252522 aattcagatgaaaaatttgtttgattagcttttcttaaaatgtcattccaagtacttcatcattttg 54252456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 30738843 - 30738774
Alignment:
Q  150 gaaaaattggtttgaatagcttctcttaaaa-tattattctaaatatttcatcattttgctataactttt 218  Q
    |||||||| ||||||||| ||| |||||||| | | ||||||| ||||||||||||||| ||||| ||||    
T  30738843 gaaaaatttgtttgaataacttatcttaaaaatgtcattctaagtatttcatcattttgttataattttt 30738774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 54136949 - 54136885
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||||| |||||||||||||||| ||||  |||||| | ||| ||| ||||||||| |||||    
T  54136949 ttcaaatgagaaattggtttgaatagtttctagtaaaatgtcattttaagtatttcatccttttg 54136885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 29212610 - 29212685
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  29212610 ttcaaatgaaaaattagtttgaataacttctcttaaaatattattctaaatattttatcattttgttataaatttt 29212685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 50679832 - 50679924
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    ||||||||||||||| |||||||||| || ||||||||||| ||||||| ||||||||||||| | ||||| |||| ||| ||||||| |||||    
T  50679832 ttcaaatgaaaaatttgtttgaatagtttatcttaaaatatcattctaagtatttcatcatttggttataa-tttttttttatactaaaatttt 50679924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 24970114 - 24970039
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||||||||| |||||||||||||  |||||||| | ||||||| ||||||||||||| | ||||| ||||    
T  24970114 ttcaaatgaaaaatttgtttgaatagcttaacttaaaatgtcattctaagtatttcatcatttggttataattttt 24970039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 180488 - 180558
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataa 213  Q
    ||||||||||||||| |||||| || ||| |||||||||||  |||||| ||||||||||||||| |||||    
T  180488 ttcaaatgaaaaattcgtttgagtaccttatcttaaaatatcgttctaagtatttcatcattttggtataa 180558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 25142327 - 25142258
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctata 212  Q
    ||||||||||||||| ||||||||| ||| | ||||||| | ||||||| ||||||||||||||| ||||    
T  25142327 ttcaaatgaaaaattcgtttgaataacttattttaaaatgtcattctaagtatttcatcattttgttata 25142258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 24234944 - 24234881
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcatttt 206  Q
    ||||||||||||||| ||||||||| ||| ||||||||| | ||| ||| ||||||||||||||    
T  24234944 ttcaaatgaaaaattcgtttgaataacttatcttaaaatgtcattttaagtatttcatcatttt 24234881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 35321625 - 35321550
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||||||||  |||||||||| || | ||||||| | ||||||||||||||||||||| | ||||| ||||    
T  35321625 ttcaaatgaaaaatctgtttgaatagtttatattaaaatgtcattctaaatatttcatcatttggttataattttt 35321550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 51717793 - 51717718
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||||||||   |||||||| ||| ||||||||| | ||||||| ||||||||||||||| ||||| ||||    
T  51717793 ttcaaatgaaaaatccatttgaatatcttatcttaaaatgtcattctaagtatttcatcattttgttataattttt 51717718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 42746793 - 42746745
Alignment:
Q  159 gtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||||| ||| ||||||||||| ||||||| |||||||||||||||    
T  42746793 gtttgaataacttatcttaaaatataattctaagtatttcatcattttg 42746745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 49491827 - 49491895
Alignment:
Q  150 gaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||| || ||||||||||||| || |||||| | ||||||||||| ||||||||||| ||||| ||||    
T  49491827 gaaaattttgtttgaatagcttatcgtaaaatgtcattctaaatatctcatcattttgttataattttt 49491895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 19300275 - 19300200
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    |||||||||||||| ||||||||||  || ||||||||| | ||||||| ||||| || |||||| ||||| ||||    
T  19300275 ttcaaatgaaaaatcggtttgaataatttatcttaaaatctcattctaagtattttatgattttgttataaatttt 19300200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 49031016 - 49031053
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaa 180  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  49031016 ttcaaatgaaaaattggtttaaatagcttctcataaaa 49031053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 36080583 - 36080674
Alignment:
Q  145 caaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    ||||||||||||  ||||||||||||| |||||||||||  |||||| ||||||||||||||| ||||| |||| || |||||||| |||||    
T  36080583 caaatgaaaaatcagtttgaatagcttatcttaaaatatcgttctaagtatttcatcattttgttataattttttttgaatactaaaatttt 36080674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 35286021 - 35286082
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcatt 204  Q
    ||||||||||||||  |||||||||| |||||||||||||| ||||||||||||||||||||    
T  35286021 ttcaaatgaaaaatctgtttgaatagtttctcttaaaatatcattctaaatatttcatcatt 35286082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 394442 - 394367
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||||||||  ||||||||||||| ||||||||| | ||||||| ||||||||||||||| ||||| ||||    
T  394442 ttcaaatgaaaaatctgtttgaatagcttatcttaaaatgtcattctaagtatttcatcattttgttataattttt 394367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 25825141 - 25825071
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataa 213  Q
    ||||||| ||||||||||||||||||||| ||||||||| | |||||  |||||||||||||||| |||||    
T  25825141 ttcaaataaaaaattggtttgaatagcttatcttaaaatgtgattctcgatatttcatcattttgttataa 25825071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 42522132 - 42522194
Alignment:
Q  144 tcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcatttt 206  Q
    |||||||||||||| ||||||||||||| ||||||||| | ||||||| ||||||||||||||    
T  42522132 tcaaatgaaaaattcgtttgaatagcttatcttaaaatgtcattctaagtatttcatcatttt 42522194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 6812587 - 6812654
Alignment:
Q  151 aaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    |||||| || ||||||||||| ||||||||||| |||||| |||||||||||||||| ||||| ||||    
T  6812587 aaaaatcggcttgaatagcttatcttaaaatatcattctagatatttcatcattttgttataattttt 6812654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 15834936 - 15834861
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||| |||||||||||||||||| || ||||||||| | |||||| |||||| ||||||||| ||||| ||||    
T  15834936 ttcaaataaaaaattggtttgaatagtttatcttaaaatgtcattctagatattttatcattttgttataattttt 15834861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 7861461 - 7861386
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    |||||||||||||||  ||||||||| || ||||||||| | ||||||| |||||||||| |||| ||||| ||||    
T  7861461 ttcaaatgaaaaattcatttgaatagtttatcttaaaatgtcattctaagtatttcatcagtttgttataattttt 7861386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 5841327 - 5841389
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattt 205  Q
    ||||||||||||||  |||||||||| || ||||| ||||| ||||||| |||||||||||||    
T  5841327 ttcaaatgaaaaatatgtttgaatagtttatcttagaatatcattctaagtatttcatcattt 5841389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 13146164 - 13146226
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattt 205  Q
    ||||||| ||||||  |||||||||| || ||||||||| | |||||||||||||||||||||    
T  13146164 ttcaaataaaaaatccgtttgaatagtttatcttaaaatgtcattctaaatatttcatcattt 13146226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 9771919 - 9771858
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcatt 204  Q
    ||||||||||||||  |||||||||| || ||||||||| ||||| ||| ||||||||||||    
T  9771919 ttcaaatgaaaaatccgtttgaatagtttatcttaaaatcttattataagtatttcatcatt 9771858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 12220217 - 12220295
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttcttta 223  Q
    ||||||||||||||  |||| ||||| || ||||||||||| ||||||| ||||||||||||| | ||||| |||| ||||    
T  12220217 ttcaaatgaaaaat--gtttaaatagtttatcttaaaatatcattctaagtatttcatcatttggttataattttttttta 12220295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 32270493 - 32270429
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||||||||||| ||||||||| ||| |||||||||   ||| ||| |||||||||||||||    
T  32270493 ttcaaatgaaaaatttgtttgaatatcttatcttaaaatgacattttaagtatttcatcattttg 32270429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 11658008 - 11658083
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    |||||||  |||| |||||| || |||||||| ||||| || ||| ||| |||| |||||||||||||||||||||    
T  11658008 ttcaaatttaaaaatggtttaaaaagcttctcataaaaaatcattttaagtattccatcattttgctataactttt 11658083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 36977420 - 36977495
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||||||||  |||||||||| || | ||||||| | ||| ||| ||||||||||||| ||||||| ||||    
T  36977420 ttcaaatgaaaaatatgtttgaatagtttattttaaaatgtcattttaagtatttcatcatttggctataattttt 36977495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 43583504 - 43583574
Alignment:
Q  142 attcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctata 212  Q
    |||||||||||||||| ||||||||| ||| ||| ||||| |   ||||| ||||||||||||||| ||||    
T  43583504 attcaaatgaaaaattcgtttgaataacttatctaaaaatgtctctctaagtatttcatcattttgttata 43583574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 42461115 - 42461045
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataa 213  Q
    ||||||| |||||| |||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||    
T  42461115 ttcaaataaaaaatcggtttgaatagcttatcttaaaatatcattctagatatttcatcattttgttataa 42461045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 7634824 - 7634747
Alignment:
Q  146 aaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttcttta 223  Q
    |||||||||||| |||||||||||||  |||||||| | ||||||| ||||||||||||||| ||||| |||| ||||    
T  7634824 aaatgaaaaattcgtttgaatagcttaacttaaaatgtcattctaagtatttcatcattttgttataattttttttta 7634747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 41670088 - 41670181
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    |||||||||||| || ||||||||||||| | ||||||| | ||||||| ||||||||||||||| ||||| |||| ||  ||||||| |||||    
T  41670088 ttcaaatgaaaattttgtttgaatagcttatattaaaatgtcattctaagtatttcatcattttgttataattttttttggatactaaaatttt 41670181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 21647153 - 21647078
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||| |||||| |||||||||| ||| ||||||||| | |||||| |||||||||||||||| ||||| ||||    
T  21647153 ttcaaataaaaaatcggtttgaataacttatcttaaaatgtcattctagatatttcatcattttgttataattttt 21647078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 3436410 - 3436480
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataa 213  Q
    |||||||||||||||  ||||||||| || ||||||||| | ||||||| ||||||||||||||| |||||    
T  3436410 ttcaaatgaaaaattcatttgaatagtttatcttaaaatgtcattctaagtatttcatcattttgttataa 3436480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 41399233 - 41399140
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    ||||||||||||||  |||||||||| || ||||||||||| ||||||  ||||||| ||||| | ||||| |||| ||| ||||||| |||||    
T  41399233 ttcaaatgaaaaatctgtttgaatagtttatcttaaaatatcattctaggtatttcaccatttggttataattttttttttatactaaaatttt 41399140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 32493547 - 32493627
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttcttta 223  Q
    |||||| |||||||| |||||||||| || ||||||||| | ||||||| ||||||||||||| | ||||| |||| ||||    
T  32493547 ttcaaaagaaaaatttgtttgaatagtttatcttaaaatgtcattctaagtatttcatcatttggttataattttttttta 32493627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 14660748 - 14660673
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    |||||||||||||| ||||||||||| || ||||||||| | ||||||| ||||| ||||||| | ||||| ||||    
T  14660748 ttcaaatgaaaaatcggtttgaatagtttatcttaaaatgtcattctaagtattttatcatttggttataattttt 14660673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 6201479 - 6201417
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattt 205  Q
    ||||||||||||||  |||||||||| || ||||||||||| ||| ||| |||||||||||||    
T  6201479 ttcaaatgaaaaatccgtttgaatagtttatcttaaaatatcattataagtatttcatcattt 6201417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 5997869 - 5997933
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||||||||||  ||||||||||  | ||||||||| | ||||||| |||||||||||||||    
T  5997869 ttcaaatgaaaaatccgtttgaataggatatcttaaaatgtcattctaagtatttcatcattttg 5997933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 27330632 - 27330569
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcatttt 206  Q
    ||||||| ||||||| ||||||||||||| | ||||||| | ||||||| ||||| ||||||||    
T  27330632 ttcaaattaaaaatttgtttgaatagcttattttaaaatgtcattctaagtattttatcatttt 27330569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 39952135 - 39952210
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||| |||||||  ||||||||  || ||||||||| | ||||||| ||||||||||||||| ||||| ||||    
T  39952135 ttcaaataaaaaatttatttgaataatttatcttaaaatgtcattctaagtatttcatcattttgttataattttt 39952210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 33891666 - 33891720
Alignment:
Q  164 aatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||| || ||||||||||| ||| ||||||||||||||||||| ||||| ||||    
T  33891666 aatagtttatcttaaaatatcattataaatatttcatcattttgttataattttt 33891720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 9621108 - 9621052
Alignment:
Q  150 gaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcatttt 206  Q
    ||||||||  ||| |||| ||| ||||||||| | ||||||||||||||||||||||    
T  9621108 gaaaaatttatttaaatatcttatcttaaaatgtcattctaaatatttcatcatttt 9621052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 12628799 - 12628709
Alignment:
Q  146 aaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    |||||||||||| |||||||||| || ||||||||| | ||| ||| ||||||||||||||| ||||| |||| ||  |||||||||||||    
T  12628799 aaatgaaaaatttgtttgaatagtttatcttaaaatgtaattttaagtatttcatcattttgttataattttttttggatactaagatttt 12628709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 15802134 - 15802050
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatac 227  Q
    |||||| |||||||  ||||||||||||| ||||||||| | ||||||| ||||||||||||||| ||||| |||| ||| ||||    
T  15802134 ttcaaacgaaaaatccgtttgaatagcttatcttaaaatgtcattctaagtatttcatcattttgttataattttttttttatac 15802050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 46284122 - 46284185
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcatttt 206  Q
    ||||||||||||||| |||| ||||  || | ||||||| ||||||||||||||||||||||||    
T  46284122 ttcaaatgaaaaatttgtttaaataatttattttaaaatgttattctaaatatttcatcatttt 46284185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 52019682 - 52019737
Alignment:
Q  152 aaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    |||||| ||||||| | |||||||||||| |||||||||| |||||||||||||||    
T  52019682 aaaatttgtttgaacaacttctcttaaaacattattctaactatttcatcattttg 52019737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 33015355 - 33015274
Alignment:
Q  148 atgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaa 230  Q
    |||||||||  ||||||| | ||| ||||||||| | ||||||| ||||||||||||||| ||||| |||| |||||||||||    
T  33015355 atgaaaaatccgtttgaacaacttatcttaaaatgtcattctaagtatttcatcattttgttataa-ttttttttaatactaa 33015274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 36700163 - 36700099
Alignment:
Q  141 aattcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattt 205  Q
    ||||||||||||||||  |||| ||||| || ||||||||| | ||||||| |||||||||||||    
T  36700163 aattcaaatgaaaaatccgtttaaatagtttatcttaaaatgtcattctaagtatttcatcattt 36700099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 36716267 - 36716203
Alignment:
Q  141 aattcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattt 205  Q
    ||||||||||||||||  |||| ||||| || ||||||||| | ||||||| |||||||||||||    
T  36716267 aattcaaatgaaaaatccgtttaaatagtttatcttaaaatgtcattctaagtatttcatcattt 36716203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 41812008 - 41812072
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||||||||||   |||||||| ||| ||||||||| | ||||||| |||||||||||||||    
T  41812008 ttcaaatgaaaaatccatttgaataacttatcttaaaatgtcattctaagtatttcatcattttg 41812072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 12880305 - 12880380
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||||||||| |||||||||  || |||||||||   ||||||| ||| ||||||||||| ||||| ||||    
T  12880305 ttcaaatgaaaaatttgtttgaataatttatcttaaaatgcaattctaagtatctcatcattttgttataattttt 12880380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 51161810 - 51161872
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattt 205  Q
    ||||||||||||||  |||||||||| |  ||||||||| | ||||||| |||||||||||||    
T  51161810 ttcaaatgaaaaatcagtttgaatagttgatcttaaaatgtcattctaagtatttcatcattt 51161872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 52042688 - 52042758
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataa 213  Q
    ||||||| |||||||  |||||||| ||| ||||||||| | |||||||  |||||||||||||| |||||    
T  52042688 ttcaaataaaaaattcatttgaataacttatcttaaaatgtcattctaagcatttcatcattttgttataa 52042758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 6492387 - 6492459
Alignment:
Q  146 aaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    |||||||||||| |||||||||  || ||||||||| | ||| ||  ||||||||||||||| ||||| ||||    
T  6492387 aaatgaaaaatttgtttgaataaattatcttaaaatgtcattttatgtatttcatcattttgttataattttt 6492459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 28606130 - 28606222
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    ||||||||||||||| |||||||||| || ||||||||| | ||||||| ||||||||||||| | ||||| |||| ||| ||||||| |||||    
T  28606130 ttcaaatgaaaaatttgtttgaatagtttatcttaaaatgtgattctaagtatttcatcatttggttataa-tttttttttatactaaaatttt 28606222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 37597289 - 37597382
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    ||||||||||||||| |||||||||||||  |||||||| | ||||||| ||||||||||||| | ||||| |||| ||  ||||||| |||||    
T  37597289 ttcaaatgaaaaattcgtttgaatagcttaacttaaaatgtcattctaagtatttcatcatttggttataattttttttggatactaaaatttt 37597382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 7635970 - 7635914
Alignment:
Q  151 aaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||    
T  7635970 aaaaatttgtttgaatagcttattttaaaatatcattctaaatatttcatcattttg 7635914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 28919119 - 28919052
Alignment:
Q  151 aaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||| ||||||||| ||| ||||||||| | ||||||||||||||||||||||| ||||| ||||    
T  28919119 aaaaattcgtttgaataacttatcttaaaatgtcattctaaatatttcatcattttgttataattttt 28919052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 5038636 - 5038710
Alignment:
Q  142 attcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactt 216  Q
    ||||||||||||||||||||||||||||||||| |||||  ||||| ||| ||||| ||| ||||| ||| ||||    
T  5038636 attcaaatgaaaaattggtttgaatagcttctcataaaaagttattgtaagtatttaatctttttggtatgactt 5038710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 29781977 - 29782037
Alignment:
Q  146 aaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    |||||||||||| ||||||| || || ||||||||| ||||||||||||||| |||||||||    
T  29781977 aaatgaaaaattcgtttgaagag-ttatcttaaaatgttattctaaatattttatcattttg 29782037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 37668673 - 37668609
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    |||||||||||| || |||||||||| || ||| ||||| | ||||||||||||| |||||||||    
T  37668673 ttcaaatgaaaatttcgtttgaatagtttatctaaaaatgtcattctaaatattttatcattttg 37668609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 12392134 - 12392209
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||||||||   ||||||||| || ||||||||| | ||||||| ||||||||||||| | ||||| ||||    
T  12392134 ttcaaatgaaaaatctatttgaatagtttatcttaaaatgtcattctaagtatttcatcatttcgttataattttt 12392209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 12407999 - 12408074
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||||||||   ||||||||| || ||||||||| | ||||||| ||||||||||||| | ||||| ||||    
T  12407999 ttcaaatgaaaaatctatttgaatagtttatcttaaaatgtcattctaagtatttcatcatttcgttataattttt 12408074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 5277728 - 5277782
Alignment:
Q  151 aaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattt 205  Q
    |||||||  |||||||||||| ||||||||| | ||||||| |||||||||||||    
T  5277728 aaaaattcatttgaatagcttatcttaaaatgtcattctaactatttcatcattt 5277782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 13953710 - 13953772
Alignment:
Q  151 aaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataa 213  Q
    ||||||| |||||||||| || | ||||||| | ||||||| ||||||||||||||| |||||    
T  13953710 aaaaatttgtttgaatagtttatattaaaatgtaattctaagtatttcatcattttgttataa 13953772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 13954341 - 13954395
Alignment:
Q  159 gtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataa 213  Q
    |||||||||| || ||||||||| | ||||||| ||||||||||||||| |||||    
T  13954341 gtttgaatagtttatcttaaaatgtaattctaagtatttcatcattttgttataa 13954395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 45234657 - 45234599
Alignment:
Q  147 aatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattt 205  Q
    ||||||||||| |||| ||||| || ||||||||| | ||||||| |||||||||||||    
T  45234657 aatgaaaaatttgtttcaatagtttatcttaaaatgtcattctaagtatttcatcattt 45234599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 39679165 - 39679241
Alignment:
Q  142 attcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    |||||||||||||||  |||| |||||||| ||||||||| | ||| ||| ||||| || |||||| ||||| ||||    
T  39679165 attcaaatgaaaaatccgtttaaatagcttatcttaaaatgtaattttaagtattttattattttgttataattttt 39679241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1505 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1505
Description:

Target: scaffold1505; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 928 - 864
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||||||||||| ||||||||| ||| ||||||||| | |||||||| ||||||||||||||    
T  928 ttcaaatgaaaaatttgtttgaataacttatcttaaaatgtaattctaaaaatttcatcattttg 864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 21511721 - 21511646
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    |||||||||||| || |||||||||| || ||||||||| | ||||||| ||||||||||||||| ||||| ||||    
T  21511721 ttcaaatgaaaagttcgtttgaatagattatcttaaaatgtcattctaagtatttcatcattttgttataattttt 21511646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 2179215 - 2179307
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    ||||||| ||||||  ||||||||| ||| ||||||||| | ||||||||||||||||||||||| ||| | |||| ||| ||||||| |||||    
T  2179215 ttcaaataaaaaatgtgtttgaataacttatcttaaaatgtcattctaaatatttcatcattttgttatca-tttttttttatactaatatttt 2179307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 12177860 - 12177924
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||||||||||| ||||||||| ||| ||||||||| | ||| ||| |||||||||||||||    
T  12177860 ttcaaatgaaaaattcgtttgaataacttatcttaaaatgtcattttaagtatttcatcattttg 12177924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 12422288 - 12422352
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||||||||||| ||||||||| ||| ||||||||| | ||| ||| |||||||||||||||    
T  12422288 ttcaaatgaaaaattcgtttgaataacttatcttaaaatgtcattttaagtatttcatcattttg 12422352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 5967350 - 5967425
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    |||||||| |||||| | |||||||| || ||||||||| | ||||||||||||||||||||| | ||||| ||||    
T  5967350 ttcaaatggaaaattcgattgaatagtttatcttaaaatgtcattctaaatatttcatcatttggttataattttt 5967425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 33562056 - 33561981
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||||||||| ||||||||| ||| ||||||||| | ||| ||| ||||| ||||||||| ||||| ||||    
T  33562056 ttcaaatgaaaaattcgtttgaatatcttatcttaaaatgtcattataagtattttatcattttgttataattttt 33561981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 41844862 - 41844937
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||| |||||  |||| ||||||||| ||||||||| | |||||| |||||||||||||||| ||||| ||||    
T  41844862 ttcaaataaaaaaccggttcgaatagcttatcttaaaatgtgattctagatatttcatcattttgttataattttt 41844937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 45364230 - 45364319
Alignment:
Q  146 aaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    |||||||||||| |||||||||| ||  |||||||| | ||| ||| ||||||||||||||| ||||| |||| ||| ||||||| |||||    
T  45364230 aaatgaaaaattcgtttgaatagtttaacttaaaatgtcattttaagtatttcatcattttgttataa-tttttttttatactaaaatttt 45364319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 32821621 - 32821713
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    ||||||||||||||  |||||||||| || | ||||||| | ||||||| ||||||||||||| | ||||| |||| ||| ||||||| |||||    
T  32821621 ttcaaatgaaaaatccgtttgaatagtttattttaaaatgtcattctaagtatttcatcatttggttataa-tttttttttatactaaaatttt 32821713  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 32178320 - 32178384
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    |||||||||||| || |||||||| |||| ||||||| | | ||| |||||||||||||||||||    
T  32178320 ttcaaatgaaaagttagtttgaattgcttatcttaaattgtcattttaaatatttcatcattttg 32178384  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 44400451 - 44400503
Alignment:
Q  161 ttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataa 213  Q
    |||||||| || ||||||||||| ||||||| ||||||||||||||| |||||    
T  44400451 ttgaatagtttatcttaaaatataattctaagtatttcatcattttgttataa 44400503  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 788766 - 788674
Alignment:
Q  142 attcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    |||||||||||||||| ||||||||| ||| ||||| ||  |   ||||||||||||||||||||| ||||  |||| ||| ||||||| |||||    
T  788766 attcaaatgaaaaatttgtttgaataacttatcttacaacgtctctctaaatatttcatcattttgttata--tttttttttatactaaaatttt 788674  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 775443 - 775373
Alignment:
Q  142 attcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctata 212  Q
    |||||||||||||||| ||||||||| ||| ||||||||  |   ||||| ||||||||||||||| ||||    
T  775443 attcaaatgaaaaattcgtttgaataacttatcttaaaacgtctctctaagtatttcatcattttgttata 775373  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 781097 - 781027
Alignment:
Q  142 attcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctata 212  Q
    |||||||||||||||| ||||||||| ||| ||||||||  |   ||||| ||||||||||||||| ||||    
T  781097 attcaaatgaaaaattcgtttgaataacttatcttaaaacgtctctctaagtatttcatcattttgttata 781027  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 25328695 - 25328749
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatattt 197  Q
    ||||||||||||||| ||||||||| ||| ||||||||| | |||||||| ||||    
T  25328695 ttcaaatgaaaaatttgtttgaataacttatcttaaaatgtaattctaaaaattt 25328749  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 31801338 - 31801272
Alignment:
Q  147 aatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataa 213  Q
    ||||||||||| |||||||||| || ||||||||| | ||| | | ||||||||||||||| |||||    
T  31801338 aatgaaaaatttgtttgaatagtttatcttaaaatgtaatttttagtatttcatcattttgttataa 31801272  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 17186758 - 17186845
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaa 230  Q
    ||||||||||||||  ||||||||||||| ||||||||| | || |||| ||||||||||||||| ||| | |||| ||| |||||||    
T  17186758 ttcaaatgaaaaatctgtttgaatagcttatcttaaaatgtcatgctaagtatttcatcattttgttatgattttttttttatactaa 17186845  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 12158980 - 12159049
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctata 212  Q
    ||||||||||||||| ||||||||| ||| ||||||||| | ||| |||||| |||||||||||| ||||    
T  12158980 ttcaaatgaaaaattcgtttgaataacttatcttaaaatgtcattttaaatagttcatcattttgttata 12159049  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 15584285 - 15584365
Alignment:
Q  144 tcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaa 224  Q
    |||||||||||||   |||||||||||| ||||||||| | ||||||| ||||||| ||||||| ||||| |||| |||||    
T  15584285 tcaaatgaaaaatccctttgaatagcttatcttaaaatgtcattctaagtatttcagcattttgttataatttttttttaa 15584365  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 3579374 - 3579438
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||||||||||||||||  |||||||||| |||||| | |||  || |||||||||||||||    
T  3579374 ttcaaatgaaaaattggttttgatagcttctcataaaatgtcatttcaagtatttcatcattttg 3579438  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 32804147 - 32804084
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    |||||||||||| || ||||||||| ||| | ||||||||| ||| |||||||||||||||||||    
T  32804147 ttcaaatgaaaa-ttcgtttgaataccttattttaaaatatcattttaaatatttcatcattttg 32804084  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 12650094 - 12650169
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||||||||  |||| ||||| || ||||||||| | ||| ||| ||||||||||||||| ||||| ||||    
T  12650094 ttcaaatgaaaaatacgtttaaatagtttatcttaaaatgtcattttaagtatttcatcattttgttataattttt 12650169  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 14529209 - 14529150
Alignment:
Q  147 aatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcatttt 206  Q
    |||||||| || ||||||| || || ||||||||| ||||||||| ||||||||||||||    
T  14529209 aatgaaaattttgtttgaaaagtttatcttaaaatgttattctaagtatttcatcatttt 14529150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 7793328 - 7793262
Alignment:
Q  147 aatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataa 213  Q
    ||||||||||  |||||||||| || ||||||||| | | ||||| ||||||||||||||| |||||    
T  7793328 aatgaaaaatccgtttgaatagtttatcttaaaatgtaagtctaagtatttcatcattttgttataa 7793262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 21955681 - 21955623
Alignment:
Q  160 tttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataactttt 218  Q
    ||||||||| || ||||||||||| ||||||| ||||||||||||| | ||||| ||||    
T  21955681 tttgaatagtttatcttaaaatatcattctaagtatttcatcatttggttataattttt 21955623  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 30793029 - 30792965
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttg 207  Q
    ||||||||||||||  ||||||||| ||| | ||||||| | ||||||| |||||||| ||||||    
T  30793029 ttcaaatgaaaaatccgtttgaataacttattttaaaatgtcattctaagtatttcattattttg 30792965  T

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Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 116668 - 116761
Alignment:
Q  143 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcattttgctataacttttctttaatactaagatttt 236  Q
    ||||||||||||||   ||||||||| || ||||||||||| ||  ||| ||||||||||||||| ||||| |||| || |||||||| |||||    
T  116668 ttcaaatgaaaaatccttttgaatagtttatcttaaaatatcatcttaagtatttcatcattttgttataattttttttgaatactaaaatttt 116761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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