View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_low_32 (Length: 236)
Name: NF1639_low_32
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 20432534 - 20432313
Alignment:
| Q |
1 |
ctgatataaaactcatagatataatttaaaaatcctaaacaatgacactttaaattgatcaaataatgatcaaaaatttattcaaaaatataccataaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20432534 |
ctgatataaaactcatagatataatttaaaaatcctaaacgatgacactttaaattgatcaaataatgatcaaaaatttattcaaaaatataccataaag |
20432435 |
T |
|
| Q |
101 |
catgtggttcatacattcttccattttttcaaaaacataacataaagcatgtggttcgtacattctttcaaaatcactaacgattagccatatggttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
20432434 |
catgtggttcatacattcttccattttttcaaaaacataacataaagcatgtggttcgtacattctttcaaaatcactgacgattagccatgtggttgat |
20432335 |
T |
|
| Q |
201 |
acattatttcgaagtaggaaat |
222 |
Q |
| |
|
||||||||||||||||| |||| |
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|
| T |
20432334 |
acattatttcgaagtagaaaat |
20432313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 20426960 - 20426748
Alignment:
| Q |
8 |
aaaactcatagatataatttaaaaatcctaaacaatgacactttaaattgatcaaataatgatcaaaaatttattcaaaaatataccataaagcatgtgg |
107 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
20426960 |
aaaacttatagatataatttaaaa-tcctaaaatataacactgtaaattgatcaaataatgatcaaaaatttattcaaaa-tataacataaagcatgtgg |
20426863 |
T |
|
| Q |
108 |
ttcatacattcttccattttttcaaaaacataacataaagcatgtggttcgtacattctttcaaaatcactaacgattagccatatggttgatacattat |
207 |
Q |
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||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| | | |||||| ||| ||||||||||||| | |
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| T |
20426862 |
ttcatacattctttcatttattcaaaaacataaaataaagcatgtggttcgtacattcttttaaaatcagtgaagattagtcatgtggttgatacattct |
20426763 |
T |
|
| Q |
208 |
ttcgaagtaggaaat |
222 |
Q |
| |
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| ||||||||||||| |
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| T |
20426762 |
tccgaagtaggaaat |
20426748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5328444 - 5328224
Alignment:
| Q |
1 |
ctgatataaaactcatagatataatttaaaaatcctaaacaatgacactttaaattgatcaaataatgatcaaaaatttattcaaaaatataccataaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
5328444 |
ctgatataaaactcatagatataatttaaaa-tcttgaacgatgacactttaaattgatcaaataatgatcaaaaatttattcaaaaatataccaaaaag |
5328346 |
T |
|
| Q |
101 |
catgtggttcatacattcttccattttttcaaaaacataacataaagcatgtggttcgtacattctttcaaaatcactaacgattagccatatggttgat |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| |
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|
| T |
5328345 |
catgtggttcatatattcttccattttttcaaaaacataacataaagcatgtggttcgtacattctttcaaaatcattgacgattagccatgtggttgat |
5328246 |
T |
|
| Q |
201 |
acattatttcgaagtaggaaat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5328245 |
acattatttcgaagtaggaaat |
5328224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 5319710 - 5319499
Alignment:
| Q |
9 |
aaactcatagatataatttaaaaatcctaaacaatgacactttaaattgatcaaataatgatcaaaaatttattcaaaaatataccataaagcatgtggt |
108 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
5319710 |
aaacttatagatataatttaaaa-tcctaaaatataacactttaaattgatcaaataatgatcaaaaatttattcaaaa-tataacataaagcatgtggt |
5319613 |
T |
|
| Q |
109 |
tcatacattcttccattttttcaaaaacataacataaagcatgtggttcgtacattctttcaaaatcactaacgattagccatatggttgatacattatt |
208 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | | |||||| ||| ||||||||||||| || |
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|
| T |
5319612 |
tcatacattcttttatttattcaaaaacataacataaagcatgtggttcgtacattcttttaaaatcagtgaagattagtcatgtggttgatacattctt |
5319513 |
T |
|
| Q |
209 |
tcgaagtaggaaat |
222 |
Q |
| |
|
||||||||||||| |
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|
| T |
5319512 |
ccgaagtaggaaat |
5319499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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