View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_low_4 (Length: 575)
Name: NF1639_low_4
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 279 - 503
Target Start/End: Original strand, 14542485 - 14542709
Alignment:
| Q |
279 |
ctcagtgcatgttcatataatattcctggtccacaatggtggtacgtaaccagccacttgcaaatggacaaatatcttatagccaccaaaataacaccat |
378 |
Q |
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| T |
14542485 |
ctcagtgcatgttcatataatatttctggtccacaatggtggtacgtaaccagccacttgcaaatggacaaatatcttatagccaccaaaataacaccat |
14542584 |
T |
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| Q |
379 |
aaacatttttactaatagatttcagaaattgagtccnnnnnnntagtagattttaaattgtctttgtgcactataaaaccacacactcatccctcacatt |
478 |
Q |
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| T |
14542585 |
aaacatttttactaatagatttcagaaattgagtccaaaaaaatagtagattttaaattgtctttgtgcactataaagccacacactcatccctcacatt |
14542684 |
T |
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| Q |
479 |
cctcaacctcaaacatcatcataac |
503 |
Q |
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| T |
14542685 |
cctcaacctcaaacatcatcataac |
14542709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 14542317 - 14542393
Alignment:
| Q |
111 |
tgtgatgcatagaaaagtgaaagaaaacattttatttttcaggaaagagagaaaggaaacatagaactgataataat |
187 |
Q |
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| T |
14542317 |
tgtgatgcatagaaaagtgaaaggaaacattttatttttcaggaaagagagaaaggaaacatagaactgataataat |
14542393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 433 - 496
Target Start/End: Complemental strand, 14580952 - 14580887
Alignment:
| Q |
433 |
aaattgtctttgtgcactataaaaccacacactcatccctcaca--ttcctcaacctcaaacatca |
496 |
Q |
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| T |
14580952 |
aaattgtccttgtgcactataaaaccacacactcatccctcacaatatcttcaacctcaaacatca |
14580887 |
T |
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