View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_low_5 (Length: 510)
Name: NF1639_low_5
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 188 - 494
Target Start/End: Complemental strand, 107382 - 107078
Alignment:
| Q |
188 |
gagttttcagcgggaaatacaaaattcttttaggataacttagacatatannnnnnnnaatgattcaggacatctattcagtcgctcctaaaatgtcatt |
287 |
Q |
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| T |
107382 |
gagttttcagcgggaaatacagaattcttttaggataacttagacatat--tttttttaatgattcagaacatctattcagtcgctcctaaaatgtcatt |
107285 |
T |
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| Q |
288 |
aaaaatatgaaaacaggaatttataggaggaaataagaatatattattaaaatgaattatgtaaatattctacctatacttgaatgttgctatatatccc |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
107284 |
aaaaatatgaaaacaggaatttataggaggaaataagaatatattattaaaatgaattatgtaaatattctacctatgcttgaatgttgctatatatccc |
107185 |
T |
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| Q |
388 |
tacggcaaacatggccaacttttttcttttggatgtttgaactgatcattctttctggagctagacatccattttagaaatgaaaacgtggaagaacaca |
487 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107184 |
tacggcaaacatggccaacttttttcttttggttgtttgaactgatcattctttctggagctagacatccattttagaaatgaaaacgtggaagaacaca |
107085 |
T |
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| Q |
488 |
tccatct |
494 |
Q |
| |
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||||||| |
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| T |
107084 |
tccatct |
107078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 107558 - 107446
Alignment:
| Q |
15 |
ggtacttatgtgcagaagttgaatccaacttattgatgagtcaacttcttatcaattaagtcaactttcattttacttcatcctaatataagaatcaaat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
107558 |
ggtacttatgtgcagaagttgaatccaacttattgatgagtcaacttcttatcaattaagtcaactttcattttactacatcctaatataagaatcaaat |
107459 |
T |
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| Q |
115 |
aatctttttcatt |
127 |
Q |
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||||||||||||| |
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| T |
107458 |
aatctttttcatt |
107446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 167491 - 167439
Alignment:
| Q |
276 |
taaaatgtcattaaaaatatgaaaacaggaatttataggaggaaataagaata |
328 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |
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| T |
167491 |
taaaatgtcattaaaaatatgaaaacgggaatttatagaaggaaataaaaata |
167439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 448 - 489
Target Start/End: Original strand, 134398 - 134439
Alignment:
| Q |
448 |
ctagacatccattttagaaatgaaaacgtggaagaacacatc |
489 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||| |
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| T |
134398 |
ctagacatccattttagaaatgaaaacgtgaaagagcacatc |
134439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 41624756 - 41624719
Alignment:
| Q |
49 |
gatgagtcaacttcttatcaattaagtcaactttcatt |
86 |
Q |
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||||||||||||||||||||||| ||||||| |||||| |
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| T |
41624756 |
gatgagtcaacttcttatcaattgagtcaaccttcatt |
41624719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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