View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_low_6 (Length: 508)
Name: NF1639_low_6
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 52761947 - 52762101
Alignment:
| Q |
17 |
agtatataaataatgctaattcagatagatgaagaacatctcaacattatggaaaatgtagtccgaagcgtcatcaagaatgcaaagtgagaaaggacaa |
116 |
Q |
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| T |
52761947 |
agtatataaataatgctaattcagatagatgaagaacatctcaacattatggaaaatgtagtccgaagcgtcataaagaatacaaagtgag-aaggacaa |
52762045 |
T |
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| Q |
117 |
agattggtaattaaaggattcatacatctttgaattgaaaaaggccgagatcgcca |
172 |
Q |
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| T |
52762046 |
agattggtaattaaaggattcatacatctttgaattgaaaaaggccgagatcgcca |
52762101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 451
Target Start/End: Complemental strand, 35614110 - 35614055
Alignment:
| Q |
396 |
actcacccagttgcctcatgacccaaaattcttggaaaaatgccaggaggttcctt |
451 |
Q |
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| T |
35614110 |
actcacccaattgcctcgtggcccagaattcttggaaaaaagccaggagggtcctt |
35614055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 456
Target Start/End: Original strand, 38029960 - 38030020
Alignment:
| Q |
396 |
actcacccagttgcctcatgacccaaaattcttggaaaaatgccaggaggttcctttaaaa |
456 |
Q |
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| T |
38029960 |
actcacccaattgcctcatgacccaatatccttggaaaaattgcaggaggctccttcaaaa |
38030020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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